View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0696_low_2 (Length: 689)
Name: NF0696_low_2
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 608; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 30 - 677
Target Start/End: Complemental strand, 27929858 - 27929211
Alignment:
| Q |
30 |
aatactgctgttgtcaatatattctgagcagtgctggttatcatcatcgtcaggggaaaagccttcatgtgaaccatggttttccaccagttcaaatatt |
129 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27929858 |
aatactgctgttgtcaatatattctgagcagtgctggttatcaccatcgtcaggggaaaagccttcatgtgaaccatggttttccaccagttcaaatatt |
27929759 |
T |
|
| Q |
130 |
aacttatggatacgtggtcgcttgagataagcatccgcaggtggaaaccaatccacattgagctagaaaaattcaacatatgtcaggttaaatccatata |
229 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27929758 |
aacttatggatacgtgttcgcttgagataagcatccgcaggtggaaaccaatccacattgagctagaaaaattcaacatatgtcatgttaaatccatata |
27929659 |
T |
|
| Q |
230 |
agcaaccatatgaatcactagggagttactaccaattgaaataatataacttaaaagatatatatggtgaggaataaaataattggaaaaaattcgacca |
329 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27929658 |
agcaactatatgaatcactagggagttactaccaattgaaataatataacttaaaaaatatatatggtgaggaataaaataattggaaaaaattcgacca |
27929559 |
T |
|
| Q |
330 |
tgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagtaaaaaga |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27929558 |
tgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagcaaaaaga |
27929459 |
T |
|
| Q |
430 |
ggccacaatcaaatgagttttcctgctgtggtacctgtcaaggacattcaatcacaacattagtaaaaacacaatgaaatggagaaaatagaaagttgtt |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
27929458 |
ggccacaatcaaatgagttttcctgctgtggtatctgtcaaggacattcaatcacaacattagtaaaaacacaatgaattggagaaaatagaaagttgtt |
27929359 |
T |
|
| Q |
530 |
cgatgataactcaattaatcatcagccagagataggcgagaaataaattcaaaaagcgacaaagtttaggccaattaacgggacttgcaaaaagaaaaca |
629 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27929358 |
cgatgataactcaactaatcatcagccagagataggcgagaaataaattcaaaaagcgacaaagtttaggccaaataacgggacttgcaaaaagaaaaca |
27929259 |
T |
|
| Q |
630 |
attgagcaaaaataaatgtttaaagaaagaataattgtctctgatatt |
677 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27929258 |
attgagcaaaaataaatgtttaaagaaagaataattgtctctgatatt |
27929211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 38 - 677
Target Start/End: Original strand, 28081988 - 28082626
Alignment:
| Q |
38 |
tgttgtcaatatattctgagcagtgctggttatcatcatcgtcaggggaaaagccttcatgtgaaccatggttttccaccagttcaaatattaacttatg |
137 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
28081988 |
tgttgtcaatatattctgagtagtggtggttatcaccatcgtcaggagaaaagccttcgtgtgaaccatggttttccgccagttcaaatattaacttatg |
28082087 |
T |
|
| Q |
138 |
gatacgtggtcgcttgagataagcatccgcaggtggaaaccaatccacattgagctagaaaaattcaacatatgtcaggttaaatccatataagcaacca |
237 |
Q |
| |
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|||| ||| | |||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
28082088 |
gatatgtgtttgcttgagataagcatccgtaggtggaaaccagtctacaatgagctagaaaaattcaacatatgtcaggttaaatccatttaagcagcca |
28082187 |
T |
|
| Q |
238 |
tatgaatcactagggagttactaccaattgaaataatataacttaaaagatatatatggtgaggaataaaataattggaaaaaattcgaccatgaaaacc |
337 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| | | ||||||| ||||||||||||||||| | |||||||||||| |
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|
| T |
28082188 |
tatgaatcactagggagttactgccaattgaaataatataactttaaaaatatacaag-tgaggaacaaaataattggaaaaaagttaaccatgaaaacc |
28082286 |
T |
|
| Q |
338 |
acttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagtaaaaagaggccacaa |
437 |
Q |
| |
|
||||||||||||||| | |||||| || | | ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
28082287 |
acttacaaagttggaacaattggttagtctcagagggttgaaatcaaatggaacttgagccacgaagagctctagataatgaagcaaaaagaggccacaa |
28082386 |
T |
|
| Q |
438 |
tcaaatgagttttcctgctgtggtacctgtcaaggacattcaatcacaacattagtaaaaacacaatgaaatggagaaaatagaaagttgttcgatgata |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
28082387 |
tcaaatgagttttcctgctgtggtacctgtcaaggacattcagtcacaacattagtaaaagcacaatcaaatggagaaaatagaaagttgttcgatgata |
28082486 |
T |
|
| Q |
538 |
actcaattaatcatcagccagagataggcgagaaataaattcaaaaagcgacaaagtttaggccaattaacgggacttgcaaaaagaaaacaattgagca |
637 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
28082487 |
actcaactaatcatcagccagagataggcgagaaataaattcaaaaagcgacaaagtttaggccaaataatgggacttgcaaaaagaaaacaattgagca |
28082586 |
T |
|
| Q |
638 |
aaaataaatgtttaaagaaagaataattgtctctgatatt |
677 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28082587 |
aaaagaaatgtttaaagaaagaataattgtctctgatatt |
28082626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 316 - 584
Target Start/End: Complemental strand, 27935603 - 27935335
Alignment:
| Q |
316 |
aaaaaattcgaccatgaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagata |
415 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||| |||||| || || | ||||||||||||||| |||||| || | | | |||| |||| ||||| |
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|
| T |
27935603 |
aaaaaagtcaaccatgaaaaccacttacaaagttggagaacttgattagtatcaaagggttgaaatcagatggaatttcatctaggaagcgctctagata |
27935504 |
T |
|
| Q |
416 |
atgaagtaaaaagaggccacaatcaaatgagttttcctgctgtggtacctgtcaaggacattcaatcacaacattagtaaaaacacaatgaaatggagaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| |
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|
| T |
27935503 |
atgaagtaaaaagaggccacaatcaaatttgttttcctgctgtggtacctgtcaaggacattcagtcacaacattagtaaaagcacaatcaaatggagaa |
27935404 |
T |
|
| Q |
516 |
aatagaaagttgttcgatgataactcaattaatcatcagccagagataggcgagaaataaattcaaaaa |
584 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
27935403 |
aatagaaagttgttcgatgataactcaactaatcatcagccagagataggagaggaataaattcaaaaa |
27935335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 38 - 271
Target Start/End: Complemental strand, 27935924 - 27935698
Alignment:
| Q |
38 |
tgttgtcaatatattctgagcagtgctggttatcatcatcgtcaggggaaaagccttcatgtgaaccatggttttccaccagttcaaatattaacttatg |
137 |
Q |
| |
|
||||||| ||||||||||| |||| ||| |||| ||| |||| ||||||||||||||| || ||||||||| |||||| |||| ||||||| |||| |
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|
| T |
27935924 |
tgttgtccttatattctgaggagtggcggtcatcaacattgtcatgggaaaagccttcat-tgt--catggtttttcaccagctcaactattaacctatg |
27935828 |
T |
|
| Q |
138 |
gatacgtggtcgcttgagataagcatccgcaggtggaaaccaatccacattgagctagaaaaattcaacatatgtcaggttaaatccatataagcaacca |
237 |
Q |
| |
|
|||| ||| ||| |||| ||| || ||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||| || ||||||| ||| | |
|
|
| T |
27935827 |
gataagtgttcgtttgaaatacgcctccgcaggtggaaaccagtccacattgagctagaaaaatacaaaatatgttaggtcaa----atataagaaacta |
27935732 |
T |
|
| Q |
238 |
tatgaatcactagggagttactaccaattgaaat |
271 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| |
|
|
| T |
27935731 |
tatgaatgactagggagttactacttattgaaat |
27935698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 46164600 - 46164457
Alignment:
| Q |
93 |
ttcatgtgaaccatggttttccaccagttcaaatattaacttatggatacgtggtcgcttgagataagcatccgcaggtggaaaccaatccacattgagc |
192 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| |||| | | | ||||| ||| ||||||||||||||| || ||||| ||||||| |||||||||||| |
|
|
| T |
46164600 |
ttcacgtgaaccatggttttccacgagttcagatatcagcctctggatcagtgttcgcttgagataagcttcagcaggcagaaaccagtccacattgagc |
46164501 |
T |
|
| Q |
193 |
tagaaaaattcaacatatgtcaggttaaatccatataagcaacc |
236 |
Q |
| |
|
| ||||||| | | ||||| |||| ||||||||||||| |||| |
|
|
| T |
46164500 |
tggaaaaatactagttatgttaggtcaaatccatataagaaacc |
46164457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 331 - 469
Target Start/End: Complemental strand, 46163596 - 46163458
Alignment:
| Q |
331 |
gaaaaccacttacaaagttggacaacttggttggtgtaaaagggttgaaatcaaatggaacttgagccacgaagagctccagataatgaagtaaaaagag |
430 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||||| | | || || |||||| || ||| ||| ||| | ||||||||| || || || || | |||||| |
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|
| T |
46163596 |
gaaaacgacttacaaaattggaaaacttggttactttgaatggattgaaagtaagaggagcttcagcaaggaagagctctaggtagtgcagcagaaagag |
46163497 |
T |
|
| Q |
431 |
gccacaatcaaatgagttttcctgctgtggtacctgtca |
469 |
Q |
| |
|
|||||||||| |||||||||| |||||||| | |||||| |
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|
| T |
46163496 |
gccacaatcatatgagttttcttgctgtggcaactgtca |
46163458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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