View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0696_low_20 (Length: 314)
Name: NF0696_low_20
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 93 - 234
Target Start/End: Complemental strand, 6102224 - 6102084
Alignment:
| Q |
93 |
ttggctccatttcttcatccaatataggtagaaggtgtcgccattccagcttaaagcgcggcaaaatgtgatacttcgtttattgtgccaattaaggact |
192 |
Q |
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| T |
6102224 |
ttggctccatttcttcatccaatataggtagaaggtgtcgccattccagcttaaagcgccgcaaa-tgcgatactccatttattgtgccaattaaggact |
6102126 |
T |
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| Q |
193 |
tcgcaacaatatggcatccacttcaactaatctacaagttgt |
234 |
Q |
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| T |
6102125 |
tcgcaacaatatggcatccacttcaactaatccacaagttgt |
6102084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 30453151 - 30453093
Alignment:
| Q |
93 |
ttggctccatttcttcatccaatataggtagaaggtgtcgccattccagcttaaagcgc |
151 |
Q |
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| T |
30453151 |
ttggctcaatttcgtcgtccaatataggtagcaggtgtcgccattccggcttgaagcgc |
30453093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 24734024 - 24733968
Alignment:
| Q |
93 |
ttggctccatttcttcatccaatataggtagaaggtgtcgccattccagcttaaagc |
149 |
Q |
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| T |
24734024 |
ttggctccatttcttcatccaatataggtagaaggtgtcgccattccggcttaaagc |
24733968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 13886999 - 13886941
Alignment:
| Q |
93 |
ttggctccatttcttcatccaatataggtagaaggtgtcgccattccagcttaaagcgc |
151 |
Q |
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||||||| |||||||| || ||| |||||||||||||||||||||| |||| |||||| |
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| T |
13886999 |
ttggctcaatttcttcgtctgatacaggtagaaggtgtcgccattccggcttgaagcgc |
13886941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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