View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0696_low_22 (Length: 310)
Name: NF0696_low_22
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 31 - 302
Target Start/End: Original strand, 38312311 - 38312582
Alignment:
| Q |
31 |
gtcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccatattagttacggtgcggtgtgttgaggctgccgaagca |
130 |
Q |
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| T |
38312311 |
gtcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccatattagttacggtgcagtgtgttgaggctgccaaagca |
38312410 |
T |
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| Q |
131 |
atgtgagctaagcgcgacaaccttgcttctgtggttagctcagctgcgaatgtccattcaatttcacatgattgtatcgctactcttacttctacagctg |
230 |
Q |
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| T |
38312411 |
atgtgagctaagtgttacaaccttgcttctgtggttagctcagctgcgaatgtccattcaatttcacatgattgtatcgctactcttacttctacagctg |
38312510 |
T |
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| Q |
231 |
ccataggtaacactttttacactcattgttaagcatctatttactattataacagagtcaatgtttcatatc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38312511 |
ccataggtaacactttttacactcattgttaagcatctatttactattataacagagtcaatgtttcatatc |
38312582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 32 - 302
Target Start/End: Original strand, 38268539 - 38268803
Alignment:
| Q |
32 |
tcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccatattagttacggtgcggtgtgttgaggctgccgaagcaa |
131 |
Q |
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| T |
38268539 |
tcaacacaaaacaaggatgagaagatggccaagacagacgtggctgttgcttcggctgccactctagttgccgcacaatgtgtggaggctgccgaagcaa |
38268638 |
T |
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| Q |
132 |
tgtgagctaagcgcgacaaccttgcttctgtggttagctcagctgcgaatgtccattcaatttcacatgattgtatcgctactcttacttctacagctgc |
231 |
Q |
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|| ||||| |||||||| ||||||| || ||||| |||||||||| |||||| | ||| |||||| |||| ||||||||||| || ||||||| |
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| T |
38268639 |
tgggagctgagcgcgaccaccttgcatcggtggtcagctcagctgtgaatgttc------gttctcatgatgatatcactactcttactgctgcagctgc |
38268732 |
T |
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| Q |
232 |
cataggtaacactttttacactcattgttaagcatctatttactattataacagagtcaatgtttcatatc |
302 |
Q |
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|| |||||| |||||| | | ||| || ||||||||||| || ||||| ||||||||||||||||| |
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| T |
38268733 |
cacaggtaagacttttagcccacatcattgagcatctatttcataatataatttagtcaatgtttcatatc |
38268803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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