View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0696_low_23 (Length: 310)
Name: NF0696_low_23
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 31 - 302
Target Start/End: Original strand, 38312311 - 38312582
Alignment:
| Q |
31 |
gtcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccatattagttacggtgcagtgtgttgaggctgccgaagca |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38312311 |
gtcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccatattagttacggtgcagtgtgttgaggctgccaaagca |
38312410 |
T |
|
| Q |
131 |
atgtgagctaagcgcgacaaccttgcttctgtggttagctcagctgcgaatgtccattcaatttcacatgattgtatcgctactcttacttctacagctg |
230 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38312411 |
atgtgagctaagtgttacaaccttgcttctgtggttagctcagctgcgaatgtccattcaatttcacatgattgtatcgctactcttacttctacagctg |
38312510 |
T |
|
| Q |
231 |
ccataggtaacactttttacactcattgttaagcatctatttactattataacagagtcaatgtttcatatc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38312511 |
ccataggtaacactttttacactcattgttaagcatctatttactattataacagagtcaatgtttcatatc |
38312582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 302
Target Start/End: Original strand, 38268539 - 38268803
Alignment:
| Q |
32 |
tcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccatattagttacggtgcagtgtgttgaggctgccgaagcaa |
131 |
Q |
| |
|
||||||| || ||||||||| ||||| | ||||||| || ||| | ||||||||||||||| ||||| | | || ||||| |||||||||||||||| |
|
|
| T |
38268539 |
tcaacacaaaacaaggatgagaagatggccaagacagacgtggctgttgcttcggctgccactctagttgccgcacaatgtgtggaggctgccgaagcaa |
38268638 |
T |
|
| Q |
132 |
tgtgagctaagcgcgacaaccttgcttctgtggttagctcagctgcgaatgtccattcaatttcacatgattgtatcgctactcttacttctacagctgc |
231 |
Q |
| |
|
|| ||||| |||||||| ||||||| || ||||| |||||||||| |||||| | ||| |||||| |||| ||||||||||| || ||||||| |
|
|
| T |
38268639 |
tgggagctgagcgcgaccaccttgcatcggtggtcagctcagctgtgaatgttc------gttctcatgatgatatcactactcttactgctgcagctgc |
38268732 |
T |
|
| Q |
232 |
cataggtaacactttttacactcattgttaagcatctatttactattataacagagtcaatgtttcatatc |
302 |
Q |
| |
|
|| |||||| |||||| | | ||| || ||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
38268733 |
cacaggtaagacttttagcccacatcattgagcatctatttcataatataatttagtcaatgtttcatatc |
38268803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 638 times since January 2019
Visitors: 4387