View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0696_low_26 (Length: 298)
Name: NF0696_low_26
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_26 |
 | |
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| [»] scaffold0038 (2 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 282
Target Start/End: Complemental strand, 28525159 - 28524887
Alignment:
| Q |
10 |
cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctctaatttctctaag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| || |||||||||||||| |||||||||||||||||| |
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| T |
28525159 |
cctgattcaatagcatgtttctggccgaggaagtcaaggatttgcagcctattgcagacaagtatgctaaatttggcggcatccctctaatttctctaag |
28525060 |
T |
|
| Q |
110 |
gcacttgcaatcatccaatttaagatccgataaaaagtgacaatctttgatgcattctggaagaattgtaaaattatttcctgataggtctaaactttcc |
209 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| | |
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|
| T |
28525059 |
gcacttgcaatcatccaatataagagcatataaaaactgaaaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaatattttc |
28524960 |
T |
|
| Q |
210 |
acattggcagaccacatgacaagtattggaagaaattcatctgacaagttgcattttttcagtttgatatatt |
282 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
28524959 |
acattagcagaccacatgacaagtattggaagaaaatcatctgacaagttgcattttttcagtttgatatatt |
28524887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 28328523 - 28328254
Alignment:
| Q |
10 |
cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctctaatttctctaag |
109 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| |||| ||||| |||||||||||| ||||||||||||| || | |||||||||||||| ||| |
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|
| T |
28328523 |
cctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctctaatttctcgaag |
28328424 |
T |
|
| Q |
110 |
gcacttgcaatcatccaatttaagatccgataaaaagtgacaatctttgatgcattctggaagaattgtaaaattatttcctgataggtctaaactttcc |
209 |
Q |
| |
|
||||||||||||||||||| |||| | ||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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|
| T |
28328423 |
gcacttgcaatcatccaatgtaagcttcgacaaaaagcgacaatctttgatgcattctggaagaattgtgaaactatttcctgataggtctaatatttcc |
28328324 |
T |
|
| Q |
210 |
acattggcagaccacatgacaagtattggaagaaattcatctgacaagttgcattttttcagtttgatat |
279 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
28328323 |
acattagcagaccacatgacaagtattggaagaaattcatctgacaagttgcatttcttcagtttgatat |
28328254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 28506159 - 28505890
Alignment:
| Q |
10 |
cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctctaatttctctaag |
109 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| |||| ||||| |||||||||||| ||||||||||||| || | |||||||||||||| ||| |
|
|
| T |
28506159 |
cctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcattttgcagacaaatattttaaatttggtggaatccctctaatttctcgaag |
28506060 |
T |
|
| Q |
110 |
gcacttgcaatcatccaatttaagatccgataaaaagtgacaatctttgatgcattctggaagaattgtaaaattatttcctgataggtctaaactttcc |
209 |
Q |
| |
|
||||||||||||||||||| |||| | ||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
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|
| T |
28506059 |
gcacttgcaatcatccaatgtaagcttcgacaaaaagcgacaatctttgatgcattctggaagaattgtgaaactatttcctgataggtctaatatttcc |
28505960 |
T |
|
| Q |
210 |
acattggcagaccacatgacaagtattggaagaaattcatctgacaagttgcattttttcagtttgatat |
279 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
28505959 |
acattagcagaccacatgacaagtattggaagaaattcatctgacaagttgcatttcttcagtttgatat |
28505890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 28239300 - 28239039
Alignment:
| Q |
10 |
cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctctaatttctctaag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||| |||||||||||| || | |||||||||||||||||| |
|
|
| T |
28239300 |
cctgattcaatagcatgtttctggccgaggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttctctaag |
28239201 |
T |
|
| Q |
110 |
gcacttgcaatcatccaatttaagatccgataaaaagtgacaatctttgatgcattctggaagaattgtaaaattatttcctgataggtctaaactttcc |
209 |
Q |
| |
|
||| ||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | |
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|
| T |
28239200 |
gcatttgcaatcatccaatataagatccgttaaaaagcgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgac |
28239101 |
T |
|
| Q |
210 |
acattggcagaccacatgacaagtattggaagaaattcatctgacaagttgcattttttcag |
271 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
28239100 |
acattagcagaccacatgacaattattggaagaaattcatctgacaagatgcaatttctcag |
28239039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 28246281 - 28246012
Alignment:
| Q |
10 |
cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctctaatttctctaag |
109 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| |||| ||||| | |||||||||| |||||||||||| || | |||||||||||||||||| |
|
|
| T |
28246281 |
cctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatccctctaatttctctaag |
28246182 |
T |
|
| Q |
110 |
gcacttgcaatcatccaatttaagatccgataaaaagtgacaatctttgatgcattctggaagaattgtaaaattatttcctgataggtctaaactttcc |
209 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||| ||| |
|
|
| T |
28246181 |
gcacttgcaatcatccaacctaagagaccataaaaagcgacaatctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattct |
28246082 |
T |
|
| Q |
210 |
acattggcagaccacatgacaagtattggaagaaattcatctgacaagttgcattttttcagtttgatat |
279 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
28246081 |
acattcgcagaccacatgacaactattggaagaaattcatctgacaagttgcattttaccagttggatat |
28246012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 28191326 - 28191064
Alignment:
| Q |
10 |
cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctctaatttctctaag |
109 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||| |||| | ||||||||| | |||||||| | || | |||||||||||||||||| |
|
|
| T |
28191326 |
cctgattcaatagcatgtttctacacgaggaagtcaatgatttgcagtttgctgcagacaagtttgttaaatttagtggaatccctctaatttctctaag |
28191227 |
T |
|
| Q |
110 |
gcacttgcaatcatccaatttaagatccgataaaaagtgacaatctttgatgcattctggaagaattgtaaaattatttcctgataggtctaaactttcc |
209 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | |
|
|
| T |
28191226 |
gcacttgcaatcatccaatataagatccgataaaaggtgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaagattctc |
28191127 |
T |
|
| Q |
210 |
acattggcagaccacatgacaagtattggaagaaattcatctgacaagttgcattttttcagt |
272 |
Q |
| |
|
|| | |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28191126 |
acgtaagcagaccacatgacaaatattggaagaaattcatctgacaagttgcaacttttcagt |
28191064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 203
Target Start/End: Complemental strand, 28142497 - 28142368
Alignment:
| Q |
74 |
ttttaaatttggcggcacccctctaatttctctaaggcacttgcaatcatccaatttaagatccgataaaaagtgacaatctttgatgcattctggaaga |
173 |
Q |
| |
|
||||||||||||||| | ||| ||||||||| ||| |||| |||| |||||||| ||| | |||||||| || ||||||| |||||| ||||| |
|
|
| T |
28142497 |
ttttaaatttggcggaatccccctaatttcttgaagagacttacaattatccaattcaaggctctgtaaaaagttgcattctttgaggcattccggaagg |
28142398 |
T |
|
| Q |
174 |
attgtaaaattatttcctgataggtctaaa |
203 |
Q |
| |
|
|||||||||||| | ||||||||| ||||| |
|
|
| T |
28142397 |
attgtaaaattactccctgataggactaaa |
28142368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 39462 - 39201
Alignment:
| Q |
10 |
cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctctaatttctctaag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||||| |||||||||||| || | |||||||||||||||||| |
|
|
| T |
39462 |
cctgattcaatagcatgtttctggccgaggaaatcaatgatttgcagtattttgcagacaagtgttttaaatttggtggaatccctctaatttctctaag |
39363 |
T |
|
| Q |
110 |
gcacttgcaatcatccaatttaagatccgataaaaagtgacaatctttgatgcattctggaagaattgtaaaattatttcctgataggtctaaactttcc |
209 |
Q |
| |
|
||| ||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | |
|
|
| T |
39362 |
gcatttgcaatcatccaatataagatccgttaaaaagcgacaatctttgatgcattctggaagaattgtgaaattatttcctgataggtctaactttgac |
39263 |
T |
|
| Q |
210 |
acattggcagaccacatgacaagtattggaagaaattcatctgacaagttgcattttttcag |
271 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||| |
|
|
| T |
39262 |
acattagcagaccacatgacaattattggaagaaattcatctgacaagatgcaatttctcag |
39201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 46443 - 46174
Alignment:
| Q |
10 |
cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctctaatttctctaag |
109 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||| |||| ||||| | |||||||||| |||||||||||| || | |||||||||||||||||| |
|
|
| T |
46443 |
cctgattcaatagcatgtttttgcacgaggaagtcaatgatttgcagcgtattgcagacaagtgttttaaatttggtggaatccctctaatttctctaag |
46344 |
T |
|
| Q |
110 |
gcacttgcaatcatccaatttaagatccgataaaaagtgacaatctttgatgcattctggaagaattgtaaaattatttcctgataggtctaaactttcc |
209 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||| ||| |
|
|
| T |
46343 |
gcacttgcaatcatccaacctaagagaccataaaaagcgacaatctttgatgcattctggaagaattgtgaaattgttttctgataggtttaaaaattct |
46244 |
T |
|
| Q |
210 |
acattggcagaccacatgacaagtattggaagaaattcatctgacaagttgcattttttcagtttgatat |
279 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
46243 |
acattcgcagaccacatgacaactattggaagaaattcatctgacaagttgcattttaccagttggatat |
46174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 55487 - 55743
Alignment:
| Q |
10 |
cctgattcaatagcatgtttctggccgaggaagtcaaggattcgcagccttttgcagacaaccattttaaatttggcggcacccctctaatttctctaag |
109 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||| |||| ||||| | |||||||||| ||||| |||||| || | |||||||||||||| ||| |
|
|
| T |
55487 |
cctgattcaatagcatgtgtttgcacgaggaagtcaatgatttgcagcgtattgcagacaagtgttttacatttggtggaatccctctaatttctcgaag |
55586 |
T |
|
| Q |
110 |
gcacttgcaatcatccaatttaagatccgataaaaagtgacaatctttgatgcattctggaagaattgtaaaattatttcctgataggtctaaactttcc |
209 |
Q |
| |
|
||||||||||||||||||||||||| | | |||||| |||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||| | |
|
|
| T |
55587 |
gcacttgcaatcatccaatttaagaaaccacaaaaagcgacaatctttcatgcattccggaagaattgtgaaattatttcctgataggtctaaagttttc |
55686 |
T |
|
| Q |
210 |
acattggcagaccacatgacaagtattggaagaaattcatctgacaagttgcatttt |
266 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
55687 |
acattagcagaccacatgacaagtattggaagaaatttatctgataagttgcatttt |
55743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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