View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0696_low_3 (Length: 569)
Name: NF0696_low_3
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 30 - 504
Target Start/End: Original strand, 39383590 - 39384064
Alignment:
| Q |
30 |
ttaaatgatgcaaccaatgcaaagggctatttccttgcaacattgtttcaacaagaactggttgcagaaaaacgggtgctgaaggaatgtagggtattcc |
129 |
Q |
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| T |
39383590 |
ttaaatgatgcaaccaatgcaaagggctatttccttgcaacattgtttcaacaagaactggttgcagaaaaacgggtgctgaaggagtgtagggtattcc |
39383689 |
T |
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| Q |
130 |
ttgaagcttctcctttgaacaactgcaactatcccactgattttaacaaaggaattagtggtgctgaacttcattcctatcacttcctccatgacaataa |
229 |
Q |
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| T |
39383690 |
ttgaagcttctcctttgaacaactgcaactatcccactgattttaacaaaggaattagtggtgctgaacttcattcctatcacttcctccatgacaataa |
39383789 |
T |
|
| Q |
230 |
gatgaatttgtataccgtgggaccttttgttttcacctcaacacccaaatcaatctctaatgggtattagatgattcgaaactcttagccccatgatgan |
329 |
Q |
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| T |
39383790 |
gatgaatttgtataccgtgggaccttttgttttcacctcaacacccaaatcaatctctaatgggtattagatgattcgaaactcttagccccatgatgat |
39383889 |
T |
|
| Q |
330 |
nnnnnnccttttctagttctaaatgtgtttgatttgatgattgttttccattttgtatcatccagattctagtatataggaaaaagttatgtaacttcta |
429 |
Q |
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| T |
39383890 |
ttttttccttttctagttctaaatgtctttgatttgatgattgttttccattttgtatcatccagattctagtatataggaaaaagttatgtaacttcta |
39383989 |
T |
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| Q |
430 |
tctacaaagtgagaacaaaagttcattatgaagaataaaagtcttgaaaacgctcttttgatttgatttgatgat |
504 |
Q |
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| T |
39383990 |
tctacaaagtgagaacaaatgttcattatgaagaataaaagtcttgaaaacgctcttttgatttgatttgatgat |
39384064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 357 - 469
Target Start/End: Original strand, 39384051 - 39384160
Alignment:
| Q |
357 |
tttgatttgatgattgttttccattttgtatcatccagattctagtatataggaaaaagttatgtaacttctatctacaaagtgaga---acaaaagttc |
453 |
Q |
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|||||||||||||||||||||||||||| |||||| | | |||||||||||||||| |||||||||||||| |||||||| | |||| || |
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| T |
39384051 |
tttgatttgatgattgttttccattttgcatcatcta------aatatataggaaaaagttctgtaacttctatcttataagtgagagagaaaaaatatc |
39384144 |
T |
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| Q |
454 |
attatgaagaataaaa |
469 |
Q |
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| T |
39384145 |
attatgaagaataaaa |
39384160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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