View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0696_low_33 (Length: 269)

Name: NF0696_low_33
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0696_low_33
NF0696_low_33
[»] chr1 (10 HSPs)
chr1 (3-240)||(16101322-16101561)
chr1 (1-240)||(14654847-14655088)
chr1 (118-240)||(16104778-16104900)
chr1 (119-252)||(19656889-19657022)
chr1 (119-240)||(14650847-14650969)
chr1 (119-240)||(14660638-14660760)
chr1 (119-240)||(17478215-17478336)
chr1 (119-233)||(29287704-29287817)
chr1 (119-187)||(17652807-17652875)
chr1 (119-190)||(47050059-47050130)
[»] chr5 (5 HSPs)
chr5 (1-240)||(5518856-5519096)
chr5 (119-227)||(42786077-42786185)
chr5 (118-240)||(27197779-27197902)
chr5 (1-82)||(38978534-38978616)
chr5 (121-239)||(15599416-15599535)
[»] chr3 (7 HSPs)
chr3 (104-235)||(7688409-7688541)
chr3 (119-240)||(5705065-5705186)
chr3 (119-240)||(28104392-28104514)
chr3 (119-240)||(28058009-28058131)
chr3 (119-240)||(28068434-28068556)
chr3 (119-225)||(19435605-19435710)
chr3 (141-189)||(17954288-17954336)
[»] chr2 (7 HSPs)
chr2 (119-240)||(10416520-10416641)
chr2 (119-252)||(4698464-4698597)
chr2 (32-131)||(9310540-9310639)
chr2 (118-227)||(808176-808285)
chr2 (119-225)||(2588428-2588533)
chr2 (119-187)||(44324742-44324810)
chr2 (141-189)||(45333308-45333356)
[»] chr6 (12 HSPs)
chr6 (118-240)||(33063689-33063811)
chr6 (131-241)||(30130915-30131025)
chr6 (8-131)||(27684718-27684842)
chr6 (119-240)||(27527824-27527946)
chr6 (119-253)||(33056197-33056334)
chr6 (128-233)||(15969961-15970066)
chr6 (119-224)||(28041304-28041408)
chr6 (119-187)||(22014634-22014702)
chr6 (122-239)||(6952786-6952903)
chr6 (116-190)||(25477662-25477735)
chr6 (14-65)||(16692837-16692888)
chr6 (141-189)||(14011684-14011732)
[»] scaffold0016 (1 HSPs)
scaffold0016 (2-136)||(76660-76795)
[»] chr7 (3 HSPs)
chr7 (117-240)||(28804133-28804256)
chr7 (109-240)||(26525371-26525503)
chr7 (141-189)||(36263730-36263778)
[»] chr4 (5 HSPs)
chr4 (117-236)||(5358101-5358221)
chr4 (122-239)||(30873893-30874010)
chr4 (119-225)||(27560628-27560733)
chr4 (119-213)||(51534234-51534327)
chr4 (119-213)||(18693730-18693823)
[»] chr8 (4 HSPs)
chr8 (118-240)||(28602613-28602735)
chr8 (119-229)||(15925525-15925635)
chr8 (119-227)||(4706151-4706259)
chr8 (141-189)||(18983071-18983119)
[»] scaffold0713 (1 HSPs)
scaffold0713 (141-240)||(1289-1388)
[»] scaffold0002 (4 HSPs)
scaffold0002 (118-211)||(10306-10399)
scaffold0002 (121-240)||(406455-406574)
scaffold0002 (196-240)||(412530-412574)
scaffold0002 (121-240)||(423827-423945)
[»] scaffold0014 (1 HSPs)
scaffold0014 (118-240)||(115262-115384)
[»] scaffold0012 (1 HSPs)
scaffold0012 (119-239)||(233054-233174)
[»] scaffold0654 (2 HSPs)
scaffold0654 (118-238)||(3957-4077)
scaffold0654 (118-238)||(5309-5431)
[»] scaffold0406 (1 HSPs)
scaffold0406 (118-219)||(4129-4228)
[»] scaffold0007 (1 HSPs)
scaffold0007 (141-187)||(61210-61256)


Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 16101561 - 16101322
Alignment:
Q  3 atgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaacc- 101  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||     
T  16101561 atgcaaatagatttttgcaagtaaatggtgccgcagttcacaatttactaacaagaatctattttcattctatgtctgcagctagtaggacctacaacca 16101462  T
Q  102 gagctctgataccaactt-gtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgac 200  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||    
T  16101461 gagctctgataccaactttgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgactacacttgac 16101362  T
Q  201 aaactataatttaaacaattttcaaattgactttcactta 240  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  16101361 aaactataatttaaacaattttcaagttgactttcactta 16101322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 14655088 - 14654847
Alignment:
Q  1 gaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaac 100  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14655088 gaatccaaatagatttttgcaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcgttctatgtctgcagctattaggacctacaac 14654989  T
Q  101 cgagctctgataccaac-ttgtcacgaccc-aaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttg 198  Q
    ||||||||||||||||| |||||||||||| ||||||||   ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||    
T  14654988 cgagctctgataccaactttgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttg 14654889  T
Q  199 acaaactataatttaaacaattttcaaattgactttcactta 240  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  14654888 acaaactataatttaaataattttcaaattgactttcactta 14654847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 16104900 - 16104778
Alignment:
Q  118 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 217  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  16104900 ttgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgactacacttgacaaactataatttaaaca 16104801  T
Q  218 attttcaaattgactttcactta 240  Q
    |||||||||||||||||||||||    
T  16104800 attttcaaattgactttcactta 16104778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 119 - 252
Target Start/End: Original strand, 19656889 - 19657022
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19656889 tgtcacgacccaagattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacaatccttgacaaactataatttaaacaa 19656988  T
Q  219 ttttcaaattgactttcacttatgatgatgtcca 252  Q
    |||||||||| |||||||||||| ||||| ||||    
T  19656989 ttttcaaatttactttcacttataatgatatcca 19657022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 14650969 - 14650847
Alignment:
Q  119 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 217  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  14650969 tgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 14650870  T
Q  218 attttcaaattgactttcactta 240  Q
    |||||||||||||||||||||||    
T  14650869 attttcaaattgactttcactta 14650847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 14660760 - 14660638
Alignment:
Q  119 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 217  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  14660760 tgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 14660661  T
Q  218 attttcaaattgactttcactta 240  Q
    |||||||||||||||||||||||    
T  14660660 attttcaaattgactttcactta 14660638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 17478215 - 17478336
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||     
T  17478215 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagccaattgacaacacttgacaaactataattcaaacat 17478314  T
Q  219 ttttcaaattgactttcactta 240  Q
    ||| ||||||||||||||||||    
T  17478315 tttccaaattgactttcactta 17478336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 119 - 233
Target Start/End: Original strand, 29287704 - 29287817
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||| |||||||||||||||||    
T  29287704 tgtcacgacccaaaattcacgatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttgac-aactataatttaaacaa 29287802  T
Q  219 ttttcaaattgactt 233  Q
    ||||||| |||||||    
T  29287803 ttttcaatttgactt 29287817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 17652807 - 17652875
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 187  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  17652807 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 17652875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 47050059 - 47050130
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgac 190  Q
    |||||||||||||||||||    |||||| ||| ||| ||||||| |||||||||||| ||||| |||||||    
T  47050059 tgtcacgacccaaaattcacaaccgtgactggcgcacaaactagaacatcctagtccgacaagcatattgac 47050130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5518856 - 5519096
Alignment:
Q  1 gaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaac 100  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  5518856 gaatgcaaatagattcttgcaagtaaatggtgccgcggttcacaatttactagcaagaatctattttaattctatgtctgcagttattaggacctacaac 5518955  T
Q  101 cgagctctgataccaac-ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttga 199  Q
    || |||||||||||||| ||||||||||||||||||||   ||||||||||| ||||||||||| |||| ||||||||||||||||||||| || ||| |    
T  5518956 cgggctctgataccaactttgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcatagtccggcaagcctattgacgacacttaa 5519055  T
Q  200 caaactataatttaaacaattttcaaattgactttcactta 240  Q
    ||||||||||||||||||||||| |||| ||  ||||||||    
T  5519056 caaactataatttaaacaatttttaaatcgaaattcactta 5519096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 119 - 227
Target Start/End: Complemental strand, 42786185 - 42786077
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    ||||||||||||||||| |   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  42786185 tgtcacgacccaaaatttataatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttaacaaactataatttaaacaa 42786086  T
Q  219 ttttcaaat 227  Q
    |||| ||||    
T  42786085 tttttaaat 42786077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 27197779 - 27197902
Alignment:
Q  118 ttgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 216  Q
    |||||||||||||||| ||||   |||||| |||| ||||||||||| ||||||||| ||||||| ||| ||||||| |||||||||||||||| ||||     
T  27197779 ttgtcacgacccaaaaattcacaatcgtgatcggcgcacgaactagaacatcctagttcggcaagtctaatgacaacacttgacaaactataatataaat 27197878  T
Q  217 aattttcaaattgactttcactta 240  Q
    |||||| |||||||||||||||||    
T  27197879 aatttttaaattgactttcactta 27197902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 38978616 - 38978534
Alignment:
Q  1 gaatgcaaatagattttt-gaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgca 82  Q
    |||||||| ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  38978616 gaatgcaagtagattttttgcaagtaaatggtgccgcggctcacaatttactagcaagaatctattttcactctgtgtctgca 38978534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 239
Target Start/End: Complemental strand, 15599535 - 15599416
Alignment:
Q  121 tcacgacccaaaat-tcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaat 219  Q
    |||||||||||||  ||||  ||||||| | | ||||||||||| ||||||||| |||||||||||||||| || |||||||  | | |||||| || ||    
T  15599535 tcacgacccaaaaactcaaaatcgtgacggacgcacgaactagaacatcctagttcggcaagcctattgacgacacttgacacgcaaaaatttagactat 15599436  T
Q  220 tttcaaattgactttcactt 239  Q
    || ||| |||| ||||||||    
T  15599435 ttccaatttgaatttcactt 15599416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 104 - 235
Target Start/End: Original strand, 7688409 - 7688541
Alignment:
Q  104 gctctgataccaactt-gtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaa 202  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7688409 gctctgataccaactttgtcacgacctaaaattcaatttcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacgacccttgacaa 7688508  T
Q  203 actataatttaaacaattttcaaattgactttc 235  Q
    |||||||||||||||||||||||||||||||||    
T  7688509 actataatttaaacaattttcaaattgactttc 7688541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 5705065 - 5705186
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    ||||||||||||||||||||| ||||||||||| | |||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5705065 tgtcacgacccaaaattcaatatcgtgaccggcgctcgaactaagacatcctagtccggcaagcctattgacgacccttgacaaactataatttaaacaa 5705164  T
Q  219 ttttcaaattgactttcactta 240  Q
    |||||||| |||||||||||||    
T  5705165 ttttcaaactgactttcactta 5705186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 28104514 - 28104392
Alignment:
Q  119 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 217  Q
    ||||||||||||||| ||||  |||||||||||| || |||||||| ||||||||||||||||||||| |||| || ||||||||||||||||||| | |    
T  28104514 tgtcacgacccaaaaattcacattcgtgaccggcgcatgaactagaacatcctagtccggcaagcctaatgacgacacttgacaaactataatttagata 28104415  T
Q  218 attttcaaattgactttcactta 240  Q
    | |||||||||||||||||||||    
T  28104414 aatttcaaattgactttcactta 28104392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 28058009 - 28058131
Alignment:
Q  119 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 217  Q
    ||||||||||||||| ||||  || ||||||||| ||||||||||| ||||||||||||||||||||| | |||||  |||||||||||||||||| | |    
T  28058009 tgtcacgacccaaaaattcacatttgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 28058108  T
Q  218 attttcaaattgactttcactta 240  Q
    | ||||||||| |||||||||||    
T  28058109 aatttcaaatttactttcactta 28058131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 28068434 - 28068556
Alignment:
Q  119 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 217  Q
    ||||||||||||||| ||||  || ||||||||| ||||||||||| ||||||||||||||||||||| | |||||  |||||||||||||||||| | |    
T  28068434 tgtcacgacccaaaaattcacatttgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 28068533  T
Q  218 attttcaaattgactttcactta 240  Q
    | ||||||||| |||||||||||    
T  28068534 aatttcaaatttactttcactta 28068556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 19435710 - 19435605
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| ||| |||| |||| |||||||| || |||||| |||||||||||||||||    
T  19435710 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctaatccgacaagtctattgacgacacttgac-aactataatttaaacaa 19435612  T
Q  219 ttttcaa 225  Q
    |||||||    
T  19435611 ttttcaa 19435605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 17954288 - 17954336
Alignment:
Q  141 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 189  Q
    |||| |||||||||||||||||| ||| |||  ||||||||||||||||    
T  17954288 tcgtaaccggcacacgaactagaacattctaacccggcaagcctattga 17954336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 10416641 - 10416520
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||    
T  10416641 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacgacacttgacaaactacaatttaaacaa 10416542  T
Q  219 ttttcaaattgactttcactta 240  Q
    ||||||||||||||||||||||    
T  10416541 ttttcaaattgactttcactta 10416520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 119 - 252
Target Start/End: Complemental strand, 4698597 - 4698464
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    ||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||    
T  4698597 tgtcacgacccaaaattcaatttcgtgaccggcgcatgaactagaacatcctagtccggcaagtctattaacgacccttgacaaactataatttaaacaa 4698498  T
Q  219 ttttcaaattgactttcacttatgatgatgtcca 252  Q
    ||||||||||||||||||||| | ||||| ||||    
T  4698497 ttttcaaattgactttcacttgtaatgatatcca 4698464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 9310540 - 9310639
Alignment:
Q  32 gccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaaccgagctctgataccaac-ttgtcacgaccca 130  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  9310540 gccgcggttcacaatttactagcaagaatctattttcattc-atgtctgcagctattaggacctacaaccgggctctgatatcaactttgtcacgaccca 9310638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 227
Target Start/End: Original strand, 808176 - 808285
Alignment:
Q  118 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 217  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  808176 ttgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttaacaaactataatttaaaca 808275  T
Q  218 attttcaaat 227  Q
    ||||| ||||    
T  808276 atttttaaat 808285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 225
Target Start/End: Complemental strand, 2588533 - 2588428
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    |||||||||||||||||||   |||||| |||| ||||||||||| |||||||||||||||||||||||||| || |||| | ||||||| |||||||||    
T  2588533 tgtcacgacccaaaattcacaatcgtgaacggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttggc-aactatagtttaaacaa 2588435  T
Q  219 ttttcaa 225  Q
    |||||||    
T  2588434 ttttcaa 2588428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 44324810 - 44324742
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 187  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  44324810 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 44324742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 45333356 - 45333308
Alignment:
Q  141 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 189  Q
    ||||||||||| ||||||||||| ||| |||| ||||||||||||||||    
T  45333356 tcgtgaccggcgcacgaactagaacattctagcccggcaagcctattga 45333308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 33063811 - 33063689
Alignment:
Q  118 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 217  Q
    |||||||||||||||||||||| || ||||||||  ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||    
T  33063811 ttgtcacgacccaaaattcaatatcatgaccggcgtacgaactagagcaccctagtccggcaagcctattgacgacacttgacaaactataatttaaaca 33063712  T
Q  218 attttcaaattgactttcactta 240  Q
    |||||||||||||||||||||||    
T  33063711 attttcaaattgactttcactta 33063689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 131 - 241
Target Start/End: Complemental strand, 30131025 - 30130915
Alignment:
Q  131 aaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattga 230  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30131025 aaattcaatttcgtgatcggcgcacgaactagagcttcctagtccggaaagcctattgacgacccttgacaaactataatttaaacaattttcaaattga 30130926  T
Q  231 ctttcacttat 241  Q
    |||||||||||    
T  30130925 ctttcacttat 30130915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 27684842 - 27684718
Alignment:
Q  8 aatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaaccgagctc 107  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||||||| ||||| ||||    
T  27684842 aatagctttttgcgagtaaatggtgccgcggttcacaatttactagcaaaaatctattatcactctatgtctgcagctatttggacctaaaaccgggctc 27684743  T
Q  108 tgataccaac-ttgtcacgacccaa 131  Q
    |||||||||| ||||||||||||||    
T  27684742 tgataccaactttgtcacgacccaa 27684718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 27527946 - 27527824
Alignment:
Q  119 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 217  Q
    ||||||||||||||| ||||   ||||||||| | ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  27527946 tgtcacgacccaaaaattcacaatcgtgaccgacgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 27527847  T
Q  218 attttcaaattgactttcactta 240  Q
    |||||||||||||||||||||||    
T  27527846 attttcaaattgactttcactta 27527824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 119 - 253
Target Start/End: Complemental strand, 33056334 - 33056197
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt---gacaacccttgacaaactataatttaaa 215  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||| | |||||||||| |||||||||   ||| || |||||||||||||||||||||    
T  33056334 tgtcaagacccaaaattcaatatcgtgaccggcgcacgaactagagtaccctagtccggtaagcctattgacgacgacacttgacaaactataatttaaa 33056235  T
Q  216 caattttcaaattgactttcacttatgatgatgtccat 253  Q
    ||||||| |||||||||||||||||  ||||| |||||    
T  33056234 caatttttaaattgactttcacttaaaatgatatccat 33056197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 15969961 - 15970066
Alignment:
Q  128 ccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaat 227  Q
    ||||||||||   ||||||||||| |||||| |||| |||| ||| |||||||| ||| |||| || |||||||||||||||||||||||||||||||||    
T  15969961 ccaaaattcacaatcgtgaccggcgcacgaaatagaacatcgtagcccggcaagtctaatgacgacacttgacaaactataatttaaacaattttcaaat 15970060  T
Q  228 tgactt 233  Q
    ||||||    
T  15970061 tgactt 15970066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 28041408 - 28041304
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||| |||| ||||||| || |||| | |||||||||||||||||    
T  28041408 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggtaagcttattgacgacacttggc-aactataatttaaacaa 28041310  T
Q  219 ttttca 224  Q
    ||||||    
T  28041309 ttttca 28041304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 22014702 - 22014634
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 187  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  22014702 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 22014634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 239
Target Start/End: Complemental strand, 6952903 - 6952786
Alignment:
Q  122 cacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattt 221  Q
    |||||||||||||| ||  || |||||||  ||| ||||||| || ||||||  | ||||| ||||||| || |||| ||||||||||||||||||||||    
T  6952903 cacgacccaaaatttaaaatcctgaccggtgcacaaactagaacaacctagtatgacaagcttattgacgacacttggcaaactataatttaaacaattt 6952804  T
Q  222 tcaaattgactttcactt 239  Q
    | ||||| ||||||||||    
T  6952803 ttaaattaactttcactt 6952786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 25477662 - 25477735
Alignment:
Q  116 acttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgac 190  Q
    ||||||||||||||||| ||||   |||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  25477662 acttgtcacgacccaaa-ttcacaatcgtaaccggcgcacgaactagaacatcctagtccggcaagcctattgac 25477735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 16692837 - 16692888
Alignment:
Q  14 tttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctatt 65  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  16692837 tttttgaaagtaaacggtgccgtggttcacaatttactagcaaaaatctatt 16692888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 14011732 - 14011684
Alignment:
Q  141 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 189  Q
    |||||| |||| ||||||||||| ||| |||| ||||||||||||||||    
T  14011732 tcgtgatcggcgcacgaactagaacattctagcccggcaagcctattga 14011684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 2 - 136
Target Start/End: Complemental strand, 76795 - 76660
Alignment:
Q  2 aatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaacc 101  Q
    ||||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  76795 aatgctaatagattttcgcaagtaaatggtgtcgcggttcacaatttactagcaagaatctattttcattctatgtctgcacctattaggacctactacc 76696  T
Q  102 gagctctgataccaac-ttgtcacgacccaaaattc 136  Q
      |||||||||||||| |||||||||  ||||||||    
T  76695 atgctctgataccaactttgtcacgattcaaaattc 76660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 117 - 240
Target Start/End: Complemental strand, 28804256 - 28804133
Alignment:
Q  117 cttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 216  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||  || ||||||||||||||||||||||    
T  28804256 cttgtcacgacccaaaatttaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagtctattgatgacacttgacaaactataatttaaac 28804157  T
Q  217 aattttcaaattgactttcactta 240  Q
    |||||| ||||||  |||||||||    
T  28804156 aatttttaaattgtttttcactta 28804133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 109 - 240
Target Start/End: Complemental strand, 26525503 - 26525371
Alignment:
Q  109 gataccaactt-gtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactat 207  Q
    ||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||| | | |||| ||| |||| |||||||| || |||||||||||||    
T  26525503 gataccaactttgtcacgaccaaaaattcaatatcgtgaccggcgcacgaactagaactttctagcccgacaagtctattgacgacacttgacaaactat 26525404  T
Q  208 aatttaaacaattttcaaattgactttcactta 240  Q
    ||||| || | ||||||| ||||||| ||||||    
T  26525403 aatttgaaaatttttcaatttgacttccactta 26525371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 36263730 - 36263778
Alignment:
Q  141 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 189  Q
    ||||||||||| ||||||||||| |||  ||| ||||||||||||||||    
T  36263730 tcgtgaccggcgcacgaactagaacattttagcccggcaagcctattga 36263778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 5358101 - 5358221
Alignment:
Q  117 cttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 216  Q
    ||||||||||||||||||  ||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  5358101 cttgtcacgacccaaaatctaaaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttgacaaactataatttaaac 5358200  T
Q  217 aattttcaaa-ttgactttca 236  Q
    |||||||||| ||||||||||    
T  5358201 aattttcaaatttgactttca 5358221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 30873893 - 30874010
Alignment:
Q  122 cacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattt 221  Q
    |||| ||||||||||||  ||||||||||| ||| ||||||| |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  30873893 cacggcccaaaattcaaaatcgtgaccggcgcacaaactagaacatcttagtccggcaagcctattgacgacacttgacaaactataatttaaacaattt 30873992  T
Q  222 tcaaattgactttcactt 239  Q
    | |||||||| |||||||    
T  30873993 ttaaattgaccttcactt 30874010  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 27560628 - 27560733
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    ||||| |||||||||||||   ||||||||||| ||||||||||| ||||||||| |||||||||||||||| || |||| | |||||||||||||||||    
T  27560628 tgtcaggacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagcctattgacgacacttggc-aactataatttaaacaa 27560726  T
Q  219 ttttcaa 225  Q
    |||||||    
T  27560727 ttttcaa 27560733  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 213
Target Start/End: Complemental strand, 51534327 - 51534234
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataattta 213  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| |||||||||||||||||||||| || |||||| ||||||||||||    
T  51534327 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctagtccggcaagcctattgaccacacttgac-aactataattta 51534234  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 18693730 - 18693823
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataattta 213  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| |||||||||||||||||||||| || | |||| ||||||||||||    
T  18693730 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctagtccggcaagcctattgacgacacatgac-aactataattta 18693823  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 28602613 - 28602735
Alignment:
Q  118 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 217  Q
    ||||||||||||||||||||   ||||||||||| |||||| |||| ||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  28602613 ttgtcacgacccaaaattcacaatcgtgaccggcgcacgaattagaacatcctagtccggcaagcctattaacgacacttgacaaactataatttaaaca 28602712  T
Q  218 attttcaaattgactttcactta 240  Q
    |||||||||| ||  ||||||||    
T  28602713 attttcaaatcgaaattcactta 28602735  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 229
Target Start/End: Complemental strand, 15925635 - 15925525
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    ||||||||||||||||| ||| ||||||||||| ||| || ||||||||||||||||| ||||||||||||   | ||||| || |||||||||||||||    
T  15925635 tgtcacgacccaaaatttaatatcgtgaccggcgcacaaattagagcatcctagtccgtcaagcctattgatggcacttgataacctataatttaaacaa 15925536  T
Q  219 ttttcaaattg 229  Q
    |||||||||||    
T  15925535 ttttcaaattg 15925525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 227
Target Start/End: Original strand, 4706151 - 4706259
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    |||||||||||||||||||   ||||||||||| ||| ||||||| |||||||||||||||||||  ||||| || ||| ||||||||||||||||||||    
T  4706151 tgtcacgacccaaaattcacaatcgtgaccggcgcacaaactagaacatcctagtccggcaagcccgttgacgacacttaacaaactataatttaaacaa 4706250  T
Q  219 ttttcaaat 227  Q
    |||| ||||    
T  4706251 tttttaaat 4706259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 18983119 - 18983071
Alignment:
Q  141 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 189  Q
    ||||||||||| ||||||||||| ||| ||||  |||||||||||||||    
T  18983119 tcgtgaccggcgcacgaactagaacattctagctcggcaagcctattga 18983071  T

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Target: scaffold0713 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 1388 - 1289
Alignment:
Q  141 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattgactttcactta 240  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  1388 tcgtgaccggcgcacgaactagaacatcctagtccggaaagcctaatgacaacacttgacaaactataatttaaataattttcaaattgacttacactta 1289  T

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Target: scaffold0002 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 10399 - 10306
Alignment:
Q  118 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatt 211  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  10399 ttgtcacgacccaaaatttaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgatgacacttgacaaactataatt 10306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 240
Target Start/End: Original strand, 406455 - 406574
Alignment:
Q  121 tcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaatt 220  Q
    ||||||||||||||||||  |||||| |||| ||||||||||| |||||| ||| |  || ||||||||| |  ||||||||||||||||||||| ||||    
T  406455 tcacgacccaaaattcaaaatcgtgatcggcgcacgaactagaacatccttgtcagtaaaacctattgacgaaacttgacaaactataatttaaataatt 406554  T
Q  221 ttcaaattgactttcactta 240  Q
    || |||||||||||||||||    
T  406555 tttaaattgactttcactta 406574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 412530 - 412574
Alignment:
Q  196 ttgacaaactataatttaaacaattttcaaattgactttcactta 240  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||    
T  412530 ttgagaaactataatttaaataatttttaaattgactttcactta 412574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 240
Target Start/End: Original strand, 423827 - 423945
Alignment:
Q  121 tcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaatt 220  Q
    |||||||||||||||||   | |||| |||  ||| ||||| | ||| ||||||||  ||  |||||||| |  |||||||||||||| |||||||||||    
T  423827 tcacgacccaaaattcacaattgtgatcggtgcacaaactaaaacattctagtccgaaaaatctattgacgaaacttgacaaactata-tttaaacaatt 423925  T
Q  221 ttcaaattgactttcactta 240  Q
    || ||||||| |||||||||    
T  423926 tttaaattgattttcactta 423945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 115262 - 115384
Alignment:
Q  118 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 217  Q
    ||||||||||||||||||||   || ||| |||| |||||||||||  |||||| || |||||| |||||||| || ||||||| |||||||||||||||    
T  115262 ttgtcacgacccaaaattcacaatcatgatcggcgcacgaactagaatatcctaatcaggcaagtctattgacgacacttgacacactataatttaaaca 115361  T
Q  218 attttcaaattgactttcactta 240  Q
    ||||||||||||| |||||||||    
T  115362 attttcaaattgattttcactta 115384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 233054 - 233174
Alignment:
Q  119 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 218  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||| ||||||||| || |||| | || |    
T  233054 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagtctattgacaacacttgacaaattaaaattcagacta 233153  T
Q  219 ttttcaaattgactttcactt 239  Q
    ||| ||| |||||||||||||    
T  233154 tttccaatttgactttcactt 233174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 238
Target Start/End: Original strand, 3957 - 4077
Alignment:
Q  118 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 217  Q
    ||||||||||||||||||||   | |||| |||| ||||||||||| |||||||||| |||||| ||||| || || |||| || |||||||||||||||    
T  3957 ttgtcacgacccaaaattcacaatagtgatcggcgcacgaactagaacatcctagtcaggcaagtctattaacgacacttggcacactataatttaaaca 4056  T
Q  218 attttcaaattgactttcact 238  Q
    ||||| ||||||| |||||||    
T  4057 atttttaaattgattttcact 4077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 238
Target Start/End: Original strand, 5309 - 5431
Alignment:
Q  118 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaac--tataatttaaa 215  Q
    ||||||||||||||||||||   | |||| |||| ||||||||||| |||||||||| |||||| |||||||| || ||||||| ||  |||||||||||    
T  5309 ttgtcacgacccaaaattcacaatagtgatcggcgcacgaactagaacatcctagtcaggcaagtctattgacgacacttgacacactatataatttaaa 5408  T
Q  216 caattttcaaattgactttcact 238  Q
    ||||||| ||||||| |||||||    
T  5409 caatttttaaattgattttcact 5431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 4228 - 4129
Alignment:
Q  118 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 217  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||| | ||||||||||||||||    
T  4228 ttgtcacgacccaaa-ttcacaatcgtgaccggcgcacgaactagaacatcctagtccagcaagcctattgacgacacttggc-aactataatttaaaca 4131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 61256 - 61210
Alignment:
Q  141 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 187  Q
    ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  61256 tcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 61210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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