View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0696_low_34 (Length: 258)
Name: NF0696_low_34
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 249
Target Start/End: Complemental strand, 5356793 - 5356574
Alignment:
| Q |
30 |
agtgcaagatatttgttcaaatgtggtaatagagcctggaaactcataggatggaagttatcgacaatttcaaaatacaaatgaccaagttctggcccaa |
129 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5356793 |
agtgcaagatatttgttcaaatgtggtaatatagcctggaaactcataggatggaagttatcgacaatttcaaaatacaaatgaccaagttctggcccaa |
5356694 |
T |
|
| Q |
130 |
gcacacctccatcacgcatcattgccttccaactttttaacaatgtacctgatattgtgccgctcaaattattggaggctaaatctacaatatgaagcat |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5356693 |
gcacacctccatcacgcatcattgccttccaactttttaacaatgtacctgatattgtgccgctcaaattattggaggctatatctacaatatgaagcat |
5356594 |
T |
|
| Q |
230 |
ctcccaatcactagtattat |
249 |
Q |
| |
|
||||||||||| ||| |||| |
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| T |
5356593 |
ctcccaatcaccagtgttat |
5356574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 5412774 - 5412575
Alignment:
| Q |
41 |
tttgttcaaatgtggtaatagagcctggaaactcataggatggaagttatcgacaatttcaaaatacaaatgaccaagttctggcccaagcacacctcca |
140 |
Q |
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||||| ||||| |||||| | ||||| |||||||||||||||||||||||| | || |||||| ||||||| || | |||| || ||| || ||| || |
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| T |
5412774 |
tttgtccaaatctggtaacaaagccttgaaactcataggatggaagttatcatcgatgtcaaaaaacaaatggcctaattctttcctaagaacgccttca |
5412675 |
T |
|
| Q |
141 |
tcacgcatcattgccttccaactttttaacaatgtacctgatattgtgccgctcaaattattggaggctaaatctacaatatgaagcatctcccaatcac |
240 |
Q |
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| T |
5412674 |
tcacgcatcattgccttccaactatttaatagggcaactggtattgttccgttgaagttattggaggctagatcaacaatatgaagcatctcccaatcac |
5412575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 69 - 240
Target Start/End: Complemental strand, 5393297 - 5393126
Alignment:
| Q |
69 |
aaactcataggatggaagttatcgacaatttcaaaatacaaatgaccaagttctggcccaagcacacctccatcacgcatcattgccttccaacttttta |
168 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| ||||||| || | ||||| |||||| ||| || ||||||||||||||||||||||||| |||| |
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| T |
5393297 |
aaactcataggatggaagttatcatcaatgtcaaaaaacaaatggcctaattctgtcccaagaacatcttcatcacgcatcattgccttccaactattta |
5393198 |
T |
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| Q |
169 |
acaatgtacctgatattgtgccgctcaaattattggaggctaaatctacaatatgaagcatctcccaatcac |
240 |
Q |
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| | | ||| |||| | ||| |||| ||||||||||||| ||| |||||||||||||||| ||| |||| |
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| T |
5393197 |
atagggagactggtattcttccgttcaagttattggaggctagatcaacaatatgaagcatcttccagtcac |
5393126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 240
Target Start/End: Original strand, 5468038 - 5468209
Alignment:
| Q |
69 |
aaactcataggatggaagttatcgacaatttcaaaatacaaatgaccaagttctggcccaagcacacctccatcacgcatcattgccttccaacttttta |
168 |
Q |
| |
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||||||| |||||| |||||||| | | || ||| ||| ||| |||| |||||| ||||| |||||| ||||||||||| ||||||||||||| |||| |
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| T |
5468038 |
aaactcacaggatgaaagttatcatcgagatcgaaaaacatatggccaaattctgggccaagaacaccttcatcacgcatcgttgccttccaactattta |
5468137 |
T |
|
| Q |
169 |
acaatgtacctgatattgtgccgctcaaattattggaggctaaatctacaatatgaagcatctcccaatcac |
240 |
Q |
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| | | | | | |||||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
5468138 |
atagagaaaccggtattgttccgctcaagttattggaggctagatcaacaatatgaagcatctcccaatcac |
5468209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 97 - 240
Target Start/End: Complemental strand, 5502471 - 5502329
Alignment:
| Q |
97 |
tttcaaaatacaaatgaccaagttctggcccaagcacacctccatcacgcatcattgccttccaactttttaacaatgtacctgatattgtgccgctcaa |
196 |
Q |
| |
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|||||||| ||||||| |||| |||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||| |||| ||| |||| || || |
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| T |
5502471 |
tttcaaaa-acaaatggccaaattctggcccaagcatgccttcatcacgcttcattgccttccaactgtttaacaatgttcctggtatcatgccactaaa |
5502373 |
T |
|
| Q |
197 |
attattggaggctaaatctacaatatgaagcatctcccaatcac |
240 |
Q |
| |
|
|||| || |||| ||| |||||||||||||| |||||||||| |
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|
| T |
5502372 |
gctatttgatgctagatcgacaatatgaagcatatcccaatcac |
5502329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 5363431 - 5363310
Alignment:
| Q |
119 |
ttctggcccaagcacacctccatcacgcatcattgccttccaactttttaacaatgtacctgatattgtgccgctcaaattattggaggctaaatctaca |
218 |
Q |
| |
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||||||||||| |||| || |||||||||||||||| |||||||| ||||| | || ||||||| |||| || || ||||||||| ||| ||| ||| |
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| T |
5363431 |
ttctggcccaaacacatcttcatcacgcatcattgctttccaactgtttaagagtgatgctgatatcatgccactaaagttattggagcctagatcaaca |
5363332 |
T |
|
| Q |
219 |
atatgaagcatctcccaatcac |
240 |
Q |
| |
|
||||||||||||| |||||||| |
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| T |
5363331 |
atatgaagcatcttccaatcac |
5363310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 240
Target Start/End: Complemental strand, 5354662 - 5354463
Alignment:
| Q |
41 |
tttgttcaaatgtggtaatagagcctggaaactcataggatggaagttatcgacaatttcaaaatacaaatgaccaagttctggcccaagcacacctcca |
140 |
Q |
| |
|
||||||||||| | ||| || | ||| ||||| ||||||||| ||| |||| ||||| |||||| ||||||| || | ||||||||||||| | | || |
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| T |
5354662 |
tttgttcaaattttgtagtacatccttgaaacgcataggatgaaagatatcaacaatatcaaaaaacaaatggccgaattctggcccaagctcgtcctca |
5354563 |
T |
|
| Q |
141 |
tcacgcatcattgccttccaactttttaacaatgtacctgatattgtgccgctcaaattattggaggctaaatctacaatatgaagcatctcccaatcac |
240 |
Q |
| |
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|| ||||||||||| |||||||| ||||| | || | ||||| ||| || | || ||||||||||||| ||| | ||||||||||||| |||||||| |
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|
| T |
5354562 |
tcgcgcatcattgctttccaactatttaagagtgcaggtgataatgttccaccgaagttattggaggctagatcagcgatatgaagcatcttccaatcac |
5354463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 5346451 - 5346598
Alignment:
| Q |
93 |
acaatttcaaaatacaaatgaccaagttctggcccaagcacacctccatcacgcatcattgccttccaactttttaacaatgtacctgatattgtgccgc |
192 |
Q |
| |
|
|||| ||||||| |||||| || | |||||| |||||||| || | |||||||||||||| |||||||| ||||| | || | ||||||||||||| |
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|
| T |
5346451 |
acaacttcaaaaaacaaattgccgaattctggaccaagcacgtcttcgtcacgcatcattgctttccaactatttaagagtgcagatgatattgtgccgg |
5346550 |
T |
|
| Q |
193 |
tcaaattattggaggctaaatctacaatatgaagcatctcccaatcac |
240 |
Q |
| |
|
| || |||||| |||||| ||| ||||||||||||| |||||||| |
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|
| T |
5346551 |
tgaatttattgcaggctagatcagagatatgaagcatcttccaatcac |
5346598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 240
Target Start/End: Complemental strand, 5378950 - 5378808
Alignment:
| Q |
98 |
ttcaaaatacaaatgaccaagttctggcccaagcacacctccatcacgcatcattgccttccaactttttaacaatgtacctgatattgtgccgctcaaa |
197 |
Q |
| |
|
||||||| |||||| || | ||||||||||||||| || | |||||||||||||| |||||||| ||||| | || | |||||| |||||||| || |
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|
| T |
5378950 |
ttcaaaaaacaaattgccgaattctggcccaagcacgtcttcgtcacgcatcattgctttccaactatttaagagtgcagatgatatcgtgccgctgaag |
5378851 |
T |
|
| Q |
198 |
ttattggaggctaaatctacaatatgaagcatctcccaatcac |
240 |
Q |
| |
|
|||||| | || | ||| | ||||||||||||| |||||||| |
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|
| T |
5378850 |
ttattgcatgccagatcaatgatatgaagcatcttccaatcac |
5378808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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