View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0696_low_40 (Length: 249)
Name: NF0696_low_40
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_40 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 25815221 - 25815159
Alignment:
| Q |
187 |
attcatacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgag |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25815221 |
attcatacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgag |
25815159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 31251922 - 31251984
Alignment:
| Q |
187 |
attcatacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgag |
249 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31251922 |
attcatacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgag |
31251984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 7471194 - 7471133
Alignment:
| Q |
1 |
atcctgaactatatatgggaatacaattggacaccgcaggcaattatcaggtaaagttacat |
62 |
Q |
| |
|
||||||||| | |||||||||| ||||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
7471194 |
atcctgaaccaaatatgggaatccaatttgacaccgcagacaattatcaggtaaaattacat |
7471133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 23052961 - 23052912
Alignment:
| Q |
194 |
cacaaaagtggtgatttattaggggtagcattccaaaactgcataaaactt |
244 |
Q |
| |
|
|||| |||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
23052961 |
cacacaagtggtgatttattagggg-accattccaaaactgcataaaactt |
23052912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1812 times since January 2019
Visitors: 4432