View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0696_low_45 (Length: 208)
Name: NF0696_low_45
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 41451969 - 41451806
Alignment:
| Q |
11 |
atgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41451969 |
atgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggttt |
41451870 |
T |
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| Q |
111 |
gtggaacaaaggcctatgtcgctcaatcaccatggattcaaagtggcacgatagaggataatat |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41451869 |
gtggaacaaaggcctatgtcgctcaatcaccatggattcaaagtggcaagatagaggataatat |
41451806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 41438800 - 41438637
Alignment:
| Q |
11 |
atgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41438800 |
atgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggttt |
41438701 |
T |
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| Q |
111 |
gtggaacaaaggcctatgtcgctcaatcaccatggattcaaagtggcacgatagaggataatat |
174 |
Q |
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| T |
41438700 |
gtggaaaaaaggcctatgttgctcaattaccatggattcaaagtggcaagatagaggataatat |
41438637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 14372398 - 14372561
Alignment:
| Q |
11 |
atgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggttt |
110 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |||| |
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| T |
14372398 |
atgaaggttgctgtttgtggtactgttggatcaggcaagtctactttactttcatgtgtattgggagaagtaccaaagatatcaggcatccttaaagttt |
14372497 |
T |
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| Q |
111 |
gtggaacaaaggcctatgtcgctcaatcaccatggattcaaagtggcacgatagaggataatat |
174 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14372498 |
gtggaacaaaggcctatgttgctcaatcaccatggattcaaagtggcacgatagaggataatat |
14372561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 14240960 - 14240797
Alignment:
| Q |
11 |
atgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |
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| T |
14240960 |
atgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtactgggagaagtaccaaagatatcaggcgttgttaaggttt |
14240861 |
T |
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| Q |
111 |
gtggaacaaaggcctatgtcgctcaatcaccatggattcaaagtggcacgatagaggataatat |
174 |
Q |
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||||| ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
14240860 |
gtggagaaaaggcctacgttgctcaatcaccatggattcaaagtggcaagatagaggataatat |
14240797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 1e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 22727358 - 22727195
Alignment:
| Q |
11 |
atgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggttt |
110 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||| ||||| | |||| |||||||| || | || ||| ||||||||||||| || | | ||||||| |
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| T |
22727358 |
atgagggttgctgtttgtggtacagttggatcaggcaagtcgagtttaatttcttgtataattggggaaataccgaagatatctgggaacttgaaggttt |
22727259 |
T |
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| Q |
111 |
gtggaacaaaggcctatgtcgctcaatcaccatggattcaaagtggcacgatagaggataatat |
174 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| ||||| || ||||||| |||||| |||||||| |
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| T |
22727258 |
gtggaacaaaggcttatgttgctcaatcaccgtggatacagagtggcaagatagaagataatat |
22727195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 22739625 - 22739788
Alignment:
| Q |
11 |
atgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggttt |
110 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||| ||||| | ||||||||||||| || | || ||| ||||||||||||| || | | || || | |
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| T |
22739625 |
atgagggttgctgtttgtggtacggttggatcaggcaagtcgagtttactttcttgtataattggtgaaataccgaagatatctgggaacttgaaagtgt |
22739724 |
T |
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| Q |
111 |
gtggaacaaaggcctatgtcgctcaatcaccatggattcaaagtggcacgatagaggataatat |
174 |
Q |
| |
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||||||||||||| ||||| |||||||| |||||||| || ||||||| |||||| || ||||| |
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| T |
22739725 |
gtggaacaaaggcttatgttgctcaatcgccatggatacagagtggcaagatagaagagaatat |
22739788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 22750677 - 22750523
Alignment:
| Q |
11 |
atgaaggttgctgtttgtggtactgttggatcaggaaagtctactttactttcttgtgtattgggagaagtaccgaagatatcaggcgtccttaaggttt |
110 |
Q |
| |
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||||| |||||| |||||||||| |||||||| ||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||| | | || || | |
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| T |
22750677 |
atgaaagttgctatttgtggtacagttggatcgggaaaatctacgttactttcatgtgtattaggagaagtaccaaagatatcagggattttaaaagtgt |
22750578 |
T |
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| Q |
111 |
gtggaacaaaggcctatgtcgctcaatcaccatggattcaaagtggcacgataga |
165 |
Q |
| |
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|||| |||||||| ||||| || || || |||||||| |||||| ||| |||||| |
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| T |
22750577 |
gtggtacaaaggcttatgtagcacagtcgccatggatacaaagtagcaagataga |
22750523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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