View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0696_low_5 (Length: 493)
Name: NF0696_low_5
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0696_low_5 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 48856063 - 48855666
Alignment:
| Q |
1 |
tcatttttgtacacaaaagaataatgaactcctttttaggaacagatgctgctaaatcattaaaaggttaaccaaccattcagtaatggacgtacttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48856063 |
tcatttttgtacacaaaagaataatgaactcctttttaggaacagatgctgctaaatcattaaaaggttaaccaaccattcagtaatggacgtacttctt |
48855964 |
T |
|
| Q |
101 |
ctttaaccatagaagtgtgagtcnnnnnnnctatagaagcgttttcttttaggtgatgacatttacnnnnnnngttactatgttttatttttggcnnnnn |
200 |
Q |
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| T |
48855963 |
ctttaaccatagaagtgtgagtcaaaaaaactatagaagcgttttcttttaggtgatgacatttacaaaaaaagttactatgttttatttttggcaaaaa |
48855864 |
T |
|
| Q |
201 |
nntataaccaaactattttaactataacaaattaacaaatttgatgccctgagaacaagaaaattgcttttcccacataaaattttgctaaaaacatatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
48855863 |
aatataaccaaactattttaactataacaaattaacaaatttgatgccctgagaacaagaaaattgtttttcctacataaaattttgctaaaaacatatg |
48855764 |
T |
|
| Q |
301 |
aaaatgacatccaataccccaactgtagttaactatagttcgatgtataattttctcttttggaacgaacgataattaactaccgtttaggtattttg |
398 |
Q |
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|||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
48855763 |
aaaatgacatccaataccccaagtgtagttaactataattcgatgcataattttctcttttggaacgaacgatagttaagtaccgtttaggtattttg |
48855666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 263 - 398
Target Start/End: Complemental strand, 44126002 - 44125867
Alignment:
| Q |
263 |
attgcttttcccacataaaattttgctaaaaacatatgaaaatgacatccaataccccaactgtagttaactatagttcgatgtataattttctcttttg |
362 |
Q |
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|||||||||||||| | ||| |||||||||||| ||| ||||||||| |||||||||| ||||||||||||| ||||| || ||||||||||| || |
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| T |
44126002 |
attgcttttcccacttcaaaggttgctaaaaacacatggaaatgacattcaataccccacctgtagttaactaatgttcgctgcttaattttctctcatg |
44125903 |
T |
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| Q |
363 |
gaacgaacgataattaactaccgtttaggtattttg |
398 |
Q |
| |
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|| |||| || |||||||||||| ||||||||| |
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| T |
44125902 |
gagcgaatagtagttaactaccgttgcggtattttg |
44125867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 361
Target Start/End: Original strand, 33819846 - 33819948
Alignment:
| Q |
259 |
gaaaattgcttttcccacataaaattttgctaaaaacatatgaaaatgacatccaatac-cccaactgtagttaactatagttcgatgtataattttctc |
357 |
Q |
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||||||||||||||||||||| || |||||||||| | ||||||||||||| |||||| |||||||||| | ||||||| ||| ||| |||||||| | |
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| T |
33819846 |
gaaaattgcttttcccacatataaacttgctaaaaa-acatgaaaatgacattcaatactcccaactgtaatcaactataattcactgtttaattttcac |
33819944 |
T |
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| Q |
358 |
tttt |
361 |
Q |
| |
|
|||| |
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|
| T |
33819945 |
tttt |
33819948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 307
Target Start/End: Original strand, 29245081 - 29245130
Alignment:
| Q |
259 |
gaaaattgcttttcccacataaaattttgct-aaaaacatatgaaaatga |
307 |
Q |
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||||||||| |||| ||||| |||||||||| |||||||||||||||||| |
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| T |
29245081 |
gaaaattgcctttctcacatcaaattttgcttaaaaacatatgaaaatga |
29245130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 96065 - 96117
Alignment:
| Q |
257 |
aagaaaattgcttttcccacataaaat-tttgctaaaaacatatgaaaatgac |
308 |
Q |
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|||||||||||||||| ||||| || | ||| ||||||||||||||||||||| |
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| T |
96065 |
aagaaaattgcttttctcacatcaattatttcctaaaaacatatgaaaatgac |
96117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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