View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0696_low_7 (Length: 481)

Name: NF0696_low_7
Description: NF0696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0696_low_7
NF0696_low_7
[»] chr8 (11 HSPs)
chr8 (211-435)||(38543408-38543629)
chr8 (389-435)||(38544328-38544374)
chr8 (387-434)||(10500953-10501000)
chr8 (366-436)||(788025-788095)
chr8 (366-433)||(31694164-31694231)
chr8 (388-435)||(40647180-40647227)
chr8 (387-436)||(5873163-5873213)
chr8 (436-470)||(28520982-28521016)
chr8 (386-435)||(5875180-5875229)
chr8 (387-436)||(10501912-10501961)
chr8 (395-435)||(35885336-35885376)
[»] chr5 (8 HSPs)
chr5 (383-436)||(1282253-1282306)
chr5 (369-435)||(1282949-1283015)
chr5 (395-435)||(30002864-30002904)
chr5 (395-435)||(42310849-42310889)
chr5 (226-299)||(26712217-26712293)
chr5 (226-299)||(26981955-26982031)
chr5 (369-435)||(6353684-6353750)
chr5 (367-405)||(32943547-32943585)
[»] chr4 (7 HSPs)
chr4 (366-435)||(5825334-5825403)
chr4 (387-438)||(24471827-24471878)
chr4 (386-435)||(35428158-35428207)
chr4 (366-405)||(33370854-33370893)
chr4 (367-405)||(33369939-33369977)
chr4 (385-437)||(17978261-17978313)
chr4 (387-435)||(38320420-38320468)
[»] chr3 (8 HSPs)
chr3 (386-434)||(51492456-51492504)
chr3 (386-435)||(42146800-42146848)
chr3 (386-435)||(42147547-42147596)
chr3 (387-435)||(7359842-7359890)
chr3 (387-435)||(46580364-46580412)
chr3 (387-437)||(23379330-23379380)
chr3 (389-435)||(50306525-50306571)
chr3 (388-436)||(53714486-53714534)
[»] scaffold0016 (1 HSPs)
scaffold0016 (386-435)||(67247-67296)
[»] chr7 (6 HSPs)
chr7 (386-435)||(9378729-9378778)
chr7 (387-427)||(34996885-34996925)
chr7 (366-405)||(32548652-32548691)
chr7 (386-436)||(9379794-9379844)
chr7 (386-435)||(34853333-34853382)
chr7 (387-435)||(36661685-36661733)
[»] chr1 (11 HSPs)
chr1 (369-434)||(4124701-4124766)
chr1 (383-436)||(4125413-4125466)
chr1 (386-435)||(15374696-15374745)
chr1 (389-435)||(15373957-15374003)
chr1 (386-435)||(46358608-46358657)
chr1 (386-435)||(51610220-51610269)
chr1 (383-435)||(49959954-49960006)
chr1 (389-435)||(3788435-3788481)
chr1 (386-435)||(51977197-51977246)
chr1 (388-436)||(13536997-13537045)
chr1 (369-405)||(31788258-31788294)
[»] chr2 (5 HSPs)
chr2 (366-435)||(9371821-9371890)
chr2 (395-436)||(42946477-42946518)
chr2 (389-435)||(26021913-26021959)
chr2 (385-437)||(2992000-2992052)
chr2 (387-435)||(5505220-5505268)
[»] chr6 (1 HSPs)
chr6 (389-435)||(3802812-3802858)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 1e-76; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 211 - 435
Target Start/End: Complemental strand, 38543629 - 38543408
Alignment:
Q  211 ctgaattatagatgatgaagagttttttatttctgtaattgttgaattttaattttgtgagttgaagattgaatgtgaaatggcattgaacgagagagac 310  Q
    ||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38543629 ctgaattataggtgatgaag--ttttttatttctgtaattgttgaattttaattttgtgagttgaagattgaatgtgaaatgacattgaacgagagagac 38543532  T
Q  311 aatgttagaagatgatggaaaaataatctaatattgacgatacacaataagacagttgatctaatggttagcattaactttcccatggtgggaaaatctt 410  Q
      ||||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||  ||||||||||||||| ||||||||||||| ||||    
T  38543531 ggtgttagaagataatggaaaaataatctagtattgacggtacacaataagacaattgatctaagagttagcattaacttt-ccatggtgggaaattctt 38543433  T
Q  411 tctcattcccaccctaaatgccacc 435  Q
     | |||| ||||| |||||||||||    
T  38543432 acccatttccaccttaaatgccacc 38543408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 38544328 - 38544374
Alignment:
Q  389 tttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||    
T  38544328 tttcccatggtggaaaaatatttctcattcccaccctaaatgccacc 38544374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 434
Target Start/End: Complemental strand, 10501000 - 10500953
Alignment:
Q  387 actttcccatggtgggaaaatctttctcattcccaccctaaatgccac 434  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||||    
T  10501000 actttcccatggtggaaaaatcttttccattcccaccctaaatgccac 10500953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 436
Target Start/End: Complemental strand, 788095 - 788025
Alignment:
Q  366 ttgatctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 436  Q
    ||||||||||||| || |  |||||| | ||||||||||| | |||| |||||||||||||||||||||||    
T  788095 ttgatctaatggtcagaaaaaactttgctatggtgggaaactttttcccattcccaccctaaatgccacca 788025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 433
Target Start/End: Complemental strand, 31694231 - 31694164
Alignment:
Q  366 ttgatctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgcca 433  Q
    |||||||||| ||||   |||||||||| |||||||||||||||| | | | ||||||||||||||||    
T  31694231 ttgatctaatcgttaaatttaactttcctatggtgggaaaatcttccccctacccaccctaaatgcca 31694164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 435
Target Start/End: Original strand, 40647180 - 40647227
Alignment:
Q  388 ctttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    |||||||||||| |||||||||||||| | ||||||||||||| ||||    
T  40647180 ctttcccatggtaggaaaatctttctcctacccaccctaaatggcacc 40647227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 5873213 - 5873163
Alignment:
Q  387 actttcccatggtgggaaaatctttctcattcccaccct-aaatgccacca 436  Q
    |||||||||| || ||||| ||||||||||||||||||| |||||||||||    
T  5873213 actttcccatagttggaaactctttctcattcccaccctaaaatgccacca 5873163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 436 - 470
Target Start/End: Original strand, 28520982 - 28521016
Alignment:
Q  436 aaatgattgatgtgaatggtaaattcttcttctct 470  Q
    |||||||||||||||||||||||| ||||||||||    
T  28520982 aaatgattgatgtgaatggtaaatgcttcttctct 28521016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 5875180 - 5875229
Alignment:
Q  386 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||||||||| |||| ||| |||| | ||||||||||||||||||||||    
T  5875180 aactttcccatagtggaaaactcttccccattcccaccctaaatgccacc 5875229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Original strand, 10501912 - 10501961
Alignment:
Q  387 actttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 436  Q
    ||||||||||||| | |||||||||  | |||||||||||||||||||||    
T  10501912 actttcccatggtagaaaaatcttttcccttcccaccctaaatgccacca 10501961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 35885376 - 35885336
Alignment:
Q  395 atggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||||||||| |||||  ||||||||||||||||||||||    
T  35885376 atggtgggaaactcttttccattcccaccctaaatgccacc 35885336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 436
Target Start/End: Complemental strand, 1282306 - 1282253
Alignment:
Q  383 attaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 436  Q
    |||||||||||||| |||||||| |||||| |||||||||||||||||||||||    
T  1282306 attaactttcccatagtgggaaactctttcccattcccaccctaaatgccacca 1282253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 1282949 - 1283015
Alignment:
Q  369 atctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    |||||||||| || |  ||||||||||| |||||||| |||||| ||||||||||||||||| ||||    
T  1282949 atctaatggtcagaaaaaactttcccatagtgggaaactctttcccattcccaccctaaatgtcacc 1283015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 30002904 - 30002864
Alignment:
Q  395 atggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  30002904 atggtgggaaaatctttccccttcccaccctaaatgccacc 30002864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 42310889 - 42310849
Alignment:
Q  395 atggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  42310889 atggtgggaaactctttcccattcccaccctaaatgccacc 42310849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 26712217 - 26712293
Alignment:
Q  226 tgaagagttttttatttctgtaattg-----ttgaattttaattttgtgagttgaagattgaatgtgaaatggcattga 299  Q
    |||||||||||| |||||||||||||     |||| |||||||| ||  ||||||||||||||||||| ||||||||||    
T  26712217 tgaagagtttttaatttctgtaattgaattgttgagttttaattctg--agttgaagattgaatgtgacatggcattga 26712293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 299
Target Start/End: Original strand, 26981955 - 26982031
Alignment:
Q  226 tgaagagttttttatttctgtaattg-----ttgaattttaattttgtgagttgaagattgaatgtgaaatggcattga 299  Q
    |||||||||||| |||||||||||||     |||| |||||||| ||  ||||||||||||||||||| ||||||||||    
T  26981955 tgaagagtttttaatttctgtaattgaattgttgagttttaattctg--agttgaagattgaatgtgacatggcattga 26982031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 435
Target Start/End: Complemental strand, 6353750 - 6353684
Alignment:
Q  369 atctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||||||||||  ||| ||||||| ||| |||||||||||||| |   ||||||||||||||||||    
T  6353750 atctaatggttaaaatttactttcctatgatgggaaaatctttccctcacccaccctaaatgccacc 6353684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 405
Target Start/End: Complemental strand, 32943585 - 32943547
Alignment:
Q  367 tgatctaatggttagcattaactttcccatggtgggaaa 405  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  32943585 tgatctaatggctaacattaactttcccatggtgggaaa 32943547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 435
Target Start/End: Complemental strand, 5825403 - 5825334
Alignment:
Q  366 ttgatctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    |||||||||||||||| |  |||||| | ||||||||||| |||||| ||||||||||||||||||||||    
T  5825403 ttgatctaatggttagaaaaaactttgctatggtgggaaactctttcccattcccaccctaaatgccacc 5825334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 387 - 438
Target Start/End: Complemental strand, 24471878 - 24471827
Alignment:
Q  387 actttcccatggtgggaaaatctttctcattcccaccctaaatgccaccaaa 438  Q
    ||||||| ||||||||||| |||||  |||||||||||||||||||||||||    
T  24471878 actttcctatggtgggaaactcttttccattcccaccctaaatgccaccaaa 24471827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 35428158 - 35428207
Alignment:
Q  386 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||||||||| |||||||| |||| | ||||||||||||||||||||||    
T  35428158 aactttcccatagtgggaaactcttccccattcccaccctaaatgccacc 35428207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 405
Target Start/End: Original strand, 33370854 - 33370893
Alignment:
Q  366 ttgatctaatggttagcattaactttcccatggtgggaaa 405  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  33370854 ttgatctaatggctaacattaactttcccatggtgggaaa 33370893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 405
Target Start/End: Complemental strand, 33369977 - 33369939
Alignment:
Q  367 tgatctaatggttagcattaactttcccatggtgggaaa 405  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  33369977 tgatctaatggctaacattaactttcccatggtgggaaa 33369939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 17978313 - 17978261
Alignment:
Q  385 taactttcccatggtgggaaaatctttctcattcccaccctaaatgccaccaa 437  Q
    ||||||||||||| ||||||| |||||| |   ||||||||||||||||||||    
T  17978313 taactttcccatgttgggaaactctttcccccgcccaccctaaatgccaccaa 17978261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 38320468 - 38320420
Alignment:
Q  387 actttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    |||||||| |||||||||| ||||||   ||||||||||||||||||||    
T  38320468 actttcccgtggtgggaaactctttcctcttcccaccctaaatgccacc 38320420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 386 - 434
Target Start/End: Original strand, 51492456 - 51492504
Alignment:
Q  386 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccac 434  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||    
T  51492456 aactttcccatggtgggaaaatctttctccatcccaccctaaatgccac 51492504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 42146848 - 42146800
Alignment:
Q  386 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||    
T  42146848 aactttcccatggtgggaaaatctttccca-tcccaccctaaatgccacc 42146800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 42147547 - 42147596
Alignment:
Q  386 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  42147547 aacttgcccatggtgggaaaatctttccccttcccaccctaaatgccacc 42147596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 7359842 - 7359890
Alignment:
Q  387 actttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||||||||||||||||| |||| ||| | ||||||||||||||||||    
T  7359842 actttcccatggtgggaaagtcttcctcttacccaccctaaatgccacc 7359890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 46580412 - 46580364
Alignment:
Q  387 actttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||| ||||||| |||||||||||||| | ||||||||||||||||||    
T  46580412 acttttccatggtaggaaaatctttctcctacccaccctaaatgccacc 46580364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 387 - 437
Target Start/End: Complemental strand, 23379380 - 23379330
Alignment:
Q  387 actttcccatggtgggaaaatctttctcattcccaccctaaatgccaccaa 437  Q
    ||||||| || ||||||||||||||| | | ||||||||||||||||||||    
T  23379380 actttcctatagtgggaaaatctttcccttacccaccctaaatgccaccaa 23379330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 50306525 - 50306571
Alignment:
Q  389 tttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||| ||||||||||| |||||| | ||||||||||||||||||||    
T  50306525 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 50306571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 53714534 - 53714486
Alignment:
Q  388 ctttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 436  Q
    |||||||||||||||||| |||||| |   |||||||||||||||||||    
T  53714534 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 53714486  T

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Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 67296 - 67247
Alignment:
Q  386 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  67296 aacttgcccatggtgggaaaatctttccccttcccaccctaaatgccacc 67247  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 9378778 - 9378729
Alignment:
Q  386 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    |||||||||||||||| |||||||||| | ||||||||||||||||||||    
T  9378778 aactttcccatggtggaaaaatctttccccttcccaccctaaatgccacc 9378729  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 427
Target Start/End: Complemental strand, 34996925 - 34996885
Alignment:
Q  387 actttcccatggtgggaaaatctttctcattcccaccctaa 427  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  34996925 actttcccatagtgggaaactctttctcattcccaccctaa 34996885  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 405
Target Start/End: Original strand, 32548652 - 32548691
Alignment:
Q  366 ttgatctaatggttagcattaactttcccatggtgggaaa 405  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  32548652 ttgatctaatggctaacattaactttcccatggtgggaaa 32548691  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 436
Target Start/End: Original strand, 9379794 - 9379844
Alignment:
Q  386 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 436  Q
    ||||||||||| |||| |||||||||| |  ||||||||||||||||||||    
T  9379794 aactttcccatagtggaaaaatctttccccatcccaccctaaatgccacca 9379844  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 34853333 - 34853382
Alignment:
Q  386 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    |||||||| ||||||||||| |||| ||| | ||||||||||||||||||    
T  34853333 aactttcctatggtgggaaagtcttcctcctacccaccctaaatgccacc 34853382  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 435
Target Start/End: Complemental strand, 36661733 - 36661685
Alignment:
Q  387 actttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||||||||||||||||| |||||| |   ||||||||||||||||||    
T  36661733 actttcccatggtgggaaattctttccctcacccaccctaaatgccacc 36661685  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 434
Target Start/End: Complemental strand, 4124766 - 4124701
Alignment:
Q  369 atctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgccac 434  Q
    |||||||||| || |  ||||||||||| |||||||| |||||| |||||||||||||||||||||    
T  4124766 atctaatggtcagaaaaaactttcccatagtgggaaactctttcccattcccaccctaaatgccac 4124701  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 436
Target Start/End: Original strand, 4125413 - 4125466
Alignment:
Q  383 attaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 436  Q
    ||||||||||| || |||||||| |||||| |||||||||||||||||||||||    
T  4125413 attaactttcctatagtgggaaactctttcccattcccaccctaaatgccacca 4125466  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 15374696 - 15374745
Alignment:
Q  386 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||||||||    
T  15374696 aacttgcccatggtgggaaaatctttccccttcccaccctaaatgccacc 15374745  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 435
Target Start/End: Complemental strand, 15374003 - 15373957
Alignment:
Q  389 tttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||    
T  15374003 tttcccatggtgggaaaatctttccccatcccaccctaaatgccacc 15373957  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 46358608 - 46358657
Alignment:
Q  386 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||||||    
T  46358608 aactttcccatggtgggaaaatcttttcccatcccaccctaaatgccacc 46358657  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 51610220 - 51610269
Alignment:
Q  386 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    |||||||||||||||||||||| || ||| | ||||||||||||||||||    
T  51610220 aactttcccatggtgggaaaatattcctcctacccaccctaaatgccacc 51610269  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 435
Target Start/End: Complemental strand, 49960006 - 49959954
Alignment:
Q  383 attaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||||||||| || || ||||| ||||||||||| |||||||||||||||||    
T  49960006 attaactttcctatagtaggaaactctttctcatttccaccctaaatgccacc 49959954  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 435
Target Start/End: Complemental strand, 3788481 - 3788435
Alignment:
Q  389 tttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||| ||||||||||| |||||| | ||||||||||||||||||||    
T  3788481 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 3788435  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Original strand, 51977197 - 51977246
Alignment:
Q  386 aactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||||||||| |||| ||| |||||| |||| |||||||||||||||||    
T  51977197 aactttcccatagtggaaaactctttcccatttccaccctaaatgccacc 51977246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 13536997 - 13537045
Alignment:
Q  388 ctttcccatggtgggaaaatctttctcattcccaccctaaatgccacca 436  Q
    |||||||||||||||||| |||||| |   |||||||||||||||||||    
T  13536997 ctttcccatggtgggaaattctttccctcacccaccctaaatgccacca 13537045  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 31788258 - 31788294
Alignment:
Q  369 atctaatggttagcattaactttcccatggtgggaaa 405  Q
    ||||||||||||  |||||||||||||||||||||||    
T  31788258 atctaatggttaaaattaactttcccatggtgggaaa 31788294  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 435
Target Start/End: Original strand, 9371821 - 9371890
Alignment:
Q  366 ttgatctaatggttagcattaactttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    |||||||||||||||   |||| ||||| |||||||||||||||||| | |||||||| ||||| |||||    
T  9371821 ttgatctaatggttaaatttaattttcctatggtgggaaaatctttcccgttcccaccttaaataccacc 9371890  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 395 - 436
Target Start/End: Original strand, 42946477 - 42946518
Alignment:
Q  395 atggtgggaaaatctttctcattcccaccctaaatgccacca 436  Q
    ||||||||||| |||||| |||||||||||||||||||||||    
T  42946477 atggtgggaaactctttcccattcccaccctaaatgccacca 42946518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 26021913 - 26021959
Alignment:
Q  389 tttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||| ||||||||||| |||||| | ||||||||||||||||||||    
T  26021913 tttcctatggtgggaaactctttccccttcccaccctaaatgccacc 26021959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 437
Target Start/End: Complemental strand, 2992052 - 2992000
Alignment:
Q  385 taactttcccatggtgggaaaatctttctcattcccaccctaaatgccaccaa 437  Q
    ||||||||||||| ||||||| |||||| |   ||||||||||||||||||||    
T  2992052 taactttcccatgttgggaaactctttcccccgcccaccctaaatgccaccaa 2992000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 435
Target Start/End: Original strand, 5505220 - 5505268
Alignment:
Q  387 actttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    ||||||||||||||| ||| ||||||   ||||||||||||||||||||    
T  5505220 actttcccatggtggaaaactctttcctcttcccaccctaaatgccacc 5505268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 3802812 - 3802858
Alignment:
Q  389 tttcccatggtgggaaaatctttctcattcccaccctaaatgccacc 435  Q
    |||||||| ||| |||| |||||| ||||||||||||||||||||||    
T  3802812 tttcccatagtgagaaattctttcccattcccaccctaaatgccacc 3802858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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