View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_high_10 (Length: 254)
Name: NF0697_high_10
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 206
Target Start/End: Complemental strand, 48075181 - 48074966
Alignment:
| Q |
16 |
ataaaggaacatcccgcaacgcgcgaggcacacgggtattaaggtacgggtactaaggtagcaaggtatatcaagtaagtaatacaagcacatata---- |
111 |
Q |
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| T |
48075181 |
ataaaggaacatcccgcaacgcgcgaggcacacgggtattaaggtacgggtactaaggtagcaaggtatagcaagtaagtaatacaagcacatacatacg |
48075082 |
T |
|
| Q |
112 |
--------ataagtatgtttctgacaccgaccattcagtc--------------ttcttcacttatattcatcatcattgtctttgagtttgagttactg |
189 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||| |
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| T |
48075081 |
taccacatataagtatgcttctgacaccgaccattcagtcttctttgcctcttgttcttcacttatattcatcatccttg-ctttgagtttgagtaactg |
48074983 |
T |
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| Q |
190 |
ttcacataaacaacaac |
206 |
Q |
| |
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||||||||||||||||| |
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| T |
48074982 |
ttcacataaacaacaac |
48074966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 48074936 - 48074891
Alignment:
| Q |
209 |
caatgttgaaggtgaagggaggaacaagaccaccatgggtaggact |
254 |
Q |
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| T |
48074936 |
caatgttgaaggtgaagggaggaacaagaccaccatgggtaggact |
48074891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 244
Target Start/End: Complemental strand, 48084349 - 48084314
Alignment:
| Q |
209 |
caatgttgaaggtgaagggaggaacaagaccaccat |
244 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
48084349 |
caatgttgaaggtgaagggaggaacaagaccaccat |
48084314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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