View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0697_high_15 (Length: 201)

Name: NF0697_high_15
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0697_high_15
NF0697_high_15
[»] chr2 (10 HSPs)
chr2 (12-84)||(5062181-5062253)
chr2 (12-82)||(5060720-5060790)
chr2 (18-84)||(28240813-28240879)
chr2 (17-85)||(3833507-3833575)
chr2 (18-85)||(28239353-28239420)
chr2 (17-83)||(26380768-26380834)
chr2 (15-86)||(26271611-26271682)
chr2 (19-81)||(36404396-36404458)
chr2 (18-68)||(26379383-26379433)
chr2 (18-84)||(36681094-36681160)
[»] chr4 (12 HSPs)
chr4 (18-87)||(44491716-44491785)
chr4 (18-83)||(44493218-44493283)
chr4 (18-85)||(11384191-11384258)
chr4 (18-81)||(32133464-32133527)
chr4 (18-88)||(1560051-1560121)
chr4 (18-86)||(11385703-11385771)
chr4 (18-81)||(29213931-29213994)
chr4 (18-73)||(29215062-29215117)
chr4 (19-83)||(56338456-56338519)
chr4 (19-85)||(32135041-32135107)
chr4 (18-71)||(21072176-21072229)
chr4 (18-82)||(2274122-2274185)
[»] chr8 (11 HSPs)
chr8 (18-85)||(42127359-42127426)
chr8 (19-86)||(2376913-2376980)
chr8 (17-84)||(38119724-38119791)
chr8 (18-86)||(42128872-42128940)
chr8 (18-85)||(43711585-43711652)
chr8 (43-88)||(28325109-28325154)
chr8 (18-67)||(45015326-45015375)
chr8 (18-86)||(6133737-6133805)
chr8 (18-85)||(4629718-4629785)
chr8 (18-84)||(6132432-6132497)
chr8 (18-82)||(28322717-28322781)
[»] chr6 (4 HSPs)
chr6 (18-84)||(22970091-22970157)
chr6 (18-84)||(23818237-23818303)
chr6 (19-84)||(22971464-22971529)
chr6 (19-84)||(23816869-23816934)
[»] chr3 (7 HSPs)
chr3 (19-82)||(38525770-38525833)
chr3 (19-85)||(38524351-38524417)
chr3 (18-85)||(45511022-45511089)
chr3 (18-81)||(45512618-45512681)
chr3 (130-180)||(5449064-5449114)
chr3 (18-78)||(2753364-2753424)
chr3 (18-85)||(2766225-2766292)
[»] chr5 (4 HSPs)
chr5 (18-66)||(8284962-8285010)
chr5 (18-86)||(35237285-35237353)
chr5 (18-85)||(35238108-35238175)
chr5 (18-85)||(40415800-40415867)
[»] chr1 (2 HSPs)
chr1 (18-86)||(48678078-48678146)
chr1 (18-84)||(48676915-48676981)
[»] scaffold0912 (1 HSPs)
scaffold0912 (19-84)||(1597-1662)
[»] chr7 (1 HSPs)
chr7 (18-86)||(18852917-18852985)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 5062181 - 5062253
Alignment:
Q  12 tgagatgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 84  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  5062181 tgagatgaaaattaataaggggaccaaaatgaaatctcataattatttaagggaccatttatgtaattaagcc 5062253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 5060790 - 5060720
Alignment:
Q  12 tgagatgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaag 82  Q
    ||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  5060790 tgagacgaaaattaataaggggatcaaaatgaaatctcataattatttaagggaccatttatgtaattaag 5060720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 28240813 - 28240879
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 84  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  28240813 gaaaattaataaggggaccaaattaaaatttcataattatttaagggaccatttatgtaattaagcc 28240879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 3833575 - 3833507
Alignment:
Q  17 tgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 85  Q
    |||||||||||||| |||| |||  ||||||||||||||||||||||||||| ||||||||||||||||    
T  3833575 tgaaaattaataagaggactaaatcaaaatctcataattatttaagggaccaattatataattaagcct 3833507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 28239420 - 28239353
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 85  Q
    |||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| || ||||||||    
T  28239420 gaaaattattaaggggaccaaattgaaatctcataattatttaagggaccatttatgtatttaagcct 28239353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 26380768 - 26380834
Alignment:
Q  17 tgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagc 83  Q
    |||||||||||||| ||||||||  ||||| ||||||||||||||||||| |||| |||||||||||    
T  26380768 tgaaaattaataagaggaccaaatcaaaatttcataattatttaagggacaatttgtataattaagc 26380834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 26271682 - 26271611
Alignment:
Q  15 gatgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 86  Q
    ||||||||||| ||| ||||||||| | |||| ||||||||||||||||||||| | || ||||||||||||    
T  26271682 gatgaaaattattaaagggaccaaattgaaatttcataattatttaagggaccaatcatgtaattaagcctt 26271611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 36404396 - 36404458
Alignment:
Q  19 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaa 81  Q
    ||||||||||| ||||||||||| |||||| ||||||| |||| ||||||||||| |||||||    
T  36404396 aaaattaataatgggaccaaaatgaaatcttataattagttaaaggaccatttatgtaattaa 36404458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 26379433 - 26379383
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggacca 68  Q
    ||||||||||||| || ||||| |||||| |||||||||||||||||||||    
T  26379433 gaaaattaataagaggtccaaattaaaatttcataattatttaagggacca 26379383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 36681160 - 36681094
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 84  Q
    ||||||||||   |||||||| || |||||||||||||| |||||||||||||  | ||||||||||    
T  36681160 gaaaattaattgtgggaccaatatgaaatctcataattagttaagggaccattcttgtaattaagcc 36681094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 44491785 - 44491716
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctta 87  Q
    |||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||    
T  44491785 gaaaattaataatgggaccaaattgaaatctcataattatttaagggaccatttatgtaattaagcctta 44491716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 44493218 - 44493283
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagc 83  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  44493218 gaaaattaataaagggaccaaattaaaatctcataattatttaagggaccatttatgtaattaagc 44493283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 11384258 - 11384191
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 85  Q
    |||||||| ||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  11384258 gaaaattattaatgggaccaaattgaaatctcataattatttaagggaccatttatataattaagcct 11384191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 32133527 - 32133464
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaa 81  Q
    |||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||    
T  32133527 gaaaattaataaggggaccatattgaaatctcataattatttaagggaccatttatataattaa 32133464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 1560121 - 1560051
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagccttaa 88  Q
    ||||||||||||||||| |||| | |||| |||||||||||||||||| ||||||| ||||||||||||||    
T  1560121 gaaaattaataaggggatcaaattgaaatttcataattatttaagggatcatttatgtaattaagccttaa 1560051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 11385703 - 11385771
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 86  Q
    ||||||||||||  |||||||| | ||||||||||||||||||| ||||||||||| ||||||||||||    
T  11385703 gaaaattaataaatggaccaaattgaaatctcataattatttaaaggaccatttatgtaattaagcctt 11385771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 29213994 - 29213931
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaa 81  Q
    ||||||||||||||| ||||| || ||||||||| |||| ||||||||||||||||||||||||    
T  29213994 gaaaattaataagggaaccaacatgaaatctcatcattagttaagggaccatttatataattaa 29213931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 29215062 - 29215117
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttat 73  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  29215062 gaaatttaataaggggaccaacataaaatctcataattagttaagggaccatttat 29215117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 56338456 - 56338519
Alignment:
Q  19 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagc 83  Q
    |||||||||||||  ||||| ||||||||||||||||| |||| |||||||||||||||||||||    
T  56338456 aaaattaataaggaaaccaacataaaatctcataattagttaa-ggaccatttatataattaagc 56338519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 32135041 - 32135107
Alignment:
Q  19 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 85  Q
    ||||||||||| ||||||| | | |||||||||||| |||||||||| ||||||| |||||||||||    
T  32135041 aaaattaataaagggaccatattgaaatctcataatgatttaagggagcatttatgtaattaagcct 32135107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 21072176 - 21072229
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccattt 71  Q
    ||||||||||||||||||||| || |||||||||||||| ||||||||| ||||    
T  21072176 gaaaattaataaggggaccaacatgaaatctcataattagttaagggactattt 21072229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 2274185 - 2274122
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaag 82  Q
    |||||||||||||||| |||| || |||||||||||||| || || |||||||||||||||||||    
T  2274185 gaaaattaataagggggccaatatgaaatctcataattagtt-agagaccatttatataattaag 2274122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 5e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 42127426 - 42127359
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 85  Q
    |||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||    
T  42127426 gaaaattattaaggggaccaaattgaaatctcataattatttaagggaccatttatgtaattaagcct 42127359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 2376980 - 2376913
Alignment:
Q  19 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 86  Q
    |||||||||||||||| |||| | |||| |||||||||||||||||||||||||| ||||||||||||    
T  2376980 aaaattaataaggggatcaaattgaaatttcataattatttaagggaccatttatgtaattaagcctt 2376913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 38119791 - 38119724
Alignment:
Q  17 tgaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 84  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||  |||||||||||||||||||||    
T  38119791 tgaaaattaataagaggaccaaattaaaatttcataattatttaaaagaccatttatataattaagcc 38119724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 42128872 - 42128940
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 86  Q
    |||||||||||| || |||||| | ||||||||||||||||||| ||||||||||| ||||||||||||    
T  42128872 gaaaattaataaaggaaccaaattgaaatctcataattatttaaaggaccatttatgtaattaagcctt 42128940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 43711652 - 43711585
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 85  Q
    |||||||||||| |||| || | | ||||||||||||||||||||||||||||||| |||||||||||    
T  43711652 gaaaattaataaagggatcatattgaaatctcataattatttaagggaccatttatgtaattaagcct 43711585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 28325109 - 28325154
Alignment:
Q  43 aaatctcataattatttaagggaccatttatataattaagccttaa 88  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||    
T  28325109 aaatctcataattatttaagcgaccatttatctaattaagccttaa 28325154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 45015375 - 45015326
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggacc 67  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||||||||    
T  45015375 gaaaattaataaggggatcaaattaaaatttcataattatttaagggacc 45015326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 6133737 - 6133805
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 86  Q
    |||||||||||||  ||| |||   |||| |||||||||||||||||||||||| ||||||||||||||    
T  6133737 gaaaattaataagaagacaaaatcgaaatttcataattatttaagggaccatttgtataattaagcctt 6133805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 4629718 - 4629785
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 85  Q
    |||||||||||||||||| ||| | ||||||| |||||||||||||||| | | || |||||||||||    
T  4629718 gaaaattaataaggggactaaattgaaatctcctaattatttaagggacaagtcatgtaattaagcct 4629785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 6132497 - 6132432
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 84  Q
    ||||||||||||| ||||||||  ||||| ||||||||| |||||||||||||| | ||||||||||    
T  6132497 gaaaattaataagaggaccaaatcaaaatttcataatta-ttaagggaccatttgtgtaattaagcc 6132432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 28322781 - 28322717
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaag 82  Q
    ||||||||||||| ||| || | | |||||||||||||||||||||||| |||||| | ||||||    
T  28322781 gaaaattaataagtggatcatattgaaatctcataattatttaagggactatttatgtcattaag 28322717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 22970157 - 22970091
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 84  Q
    |||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  22970157 gaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataattaagcc 22970091  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 23818237 - 23818303
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 84  Q
    |||||||||||||||| ||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  23818237 gaaaattaataagggggccaaattgaaatttcataattatttaagggaccatttatataattaagcc 23818303  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 22971464 - 22971529
Alignment:
Q  19 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 84  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||||||||||||    
T  22971464 aaaattaataaggggaccaaattgaaatttcataattatttaagggactatttatataattaagcc 22971529  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 23816934 - 23816869
Alignment:
Q  19 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 84  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||||| |||||||||||||||||    
T  23816934 aaaattaataaggggaccaaattgaaatttcataattatttaagggactatttatataattaagcc 23816869  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 38525770 - 38525833
Alignment:
Q  19 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaag 82  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||    
T  38525770 aaaattactaaggggaccaaaatgaaatctcataattagttaagggaccatttatgtaattaag 38525833  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 38524417 - 38524351
Alignment:
Q  19 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 85  Q
    ||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||||||    
T  38524417 aaaattattaatgggaccaaaatgaaatctcataattagttaagggaccatttatgtaattaagcct 38524351  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 45511089 - 45511022
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 85  Q
    |||||||||||| ||||||| | | ||||||||||||||||||||||| ||||||| |||||||||||    
T  45511089 gaaaattaataaagggaccatattgaaatctcataattatttaagggagcatttatgtaattaagcct 45511022  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 45512618 - 45512681
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaa 81  Q
    |||| |||||||||||  || | | |||||||||||||||||||||||||||||||||||||||    
T  45512618 gaaagttaataagggggtcatattgaaatctcataattatttaagggaccatttatataattaa 45512681  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 5449114 - 5449064
Alignment:
Q  130 cctttaaacaatatcatcaaattgtttgatattatactatagcgggaagat 180  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||||    
T  5449114 ccttcaaacaatatcataaaattgtttgatattacactatagcgggaagat 5449064  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 2753364 - 2753424
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataat 78  Q
    ||||||||||||||||| || | ||||| |||||||||| ||||||||||||| |||||||    
T  2753364 gaaaattaataaggggatcatattaaaaactcataattagttaagggaccattgatataat 2753424  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 2766292 - 2766225
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 85  Q
    ||||||||||||||||||||   ||||| |||||||||| |||||||| ||||||| | |||||||||    
T  2766292 gaaaattaataaggggaccatgttaaaaactcataattaattaagggatcatttatgttattaagcct 2766225  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 8284962 - 8285010
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggac 66  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||    
T  8284962 gaaaattaataaggggaccaaattaaaatttcataattatttaagggac 8285010  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 35237353 - 35237285
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 86  Q
    |||||||||||| ||||| ||| | |||| ||||||||| ||||| |||||||||||||||||| ||||    
T  35237353 gaaaattaataaagggactaaattgaaatttcataattacttaagagaccatttatataattaaacctt 35237285  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 35238108 - 35238175
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 85  Q
    ||||||||||||  ||| |||| | |||| | |||||||||||||| |||||||||||||||||||||    
T  35238108 gaaaattaataaaaggatcaaattgaaattttataattatttaaggaaccatttatataattaagcct 35238175  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 40415800 - 40415867
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcct 85  Q
    ||||||||||||||||| || | | ||| |||||||||| ||||| |||||||| |||||| ||||||    
T  40415800 gaaaattaataaggggatcatattgaaaactcataattagttaagagaccatttgtataatcaagcct 40415867  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 48678078 - 48678146
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 86  Q
    |||||||||||| |||||||||   ||||||||||||||||||||| |||| ||||||||| |||||||    
T  48678078 gaaaattaataaagggaccaaatcgaaatctcataattatttaaggaaccaattatataataaagcctt 48678146  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 48676981 - 48676915
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 84  Q
    ||||||||||||| |||  |||   ||||||||||||||||||||  |||| |||||||||||||||    
T  48676981 gaaaattaataagaggatgaaatcgaaatctcataattatttaagccaccaattatataattaagcc 48676915  T

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Target: scaffold0912 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 1662 - 1597
Alignment:
Q  19 aaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcc 84  Q
    ||||||||||||||||  || ||||||||||||| ||| |||| ||| ||||||| ||||||||||    
T  1662 aaaattaataaggggattaacataaaatctcatagttagttaatggatcatttatgtaattaagcc 1597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 18852917 - 18852985
Alignment:
Q  18 gaaaattaataaggggaccaaaataaaatctcataattatttaagggaccatttatataattaagcctt 86  Q
    |||||||||| |  || |||| || |||| ||||||||| |||||||| ||||||| ||||||||||||    
T  18852917 gaaaattaattacagggccaatatgaaatttcataattagttaagggatcatttatgtaattaagcctt 18852985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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