View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_high_3 (Length: 465)
Name: NF0697_high_3
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 100 - 459
Target Start/End: Original strand, 48588462 - 48588821
Alignment:
| Q |
100 |
tgacactgaattatggtgtgattttcttctcacccgttgtttggtatcttcgactccatttttggctttgttaaccttgttacagctcccttccttttcc |
199 |
Q |
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| T |
48588462 |
tgacactgaattatggtgtgattttcttctcacccgttgtttggtatcttcgactccatttttggctttgttaaccttgttacagctcccttccttttcc |
48588561 |
T |
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| Q |
200 |
tgcaaatccaattgaattattgtgtgttcggaacataaaatgtataactgaatcatnnnnnnnnnctggtaattttatcaataaattttaattctttatc |
299 |
Q |
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| T |
48588562 |
tgcaaatccaattgaattattgtgtgttcggaacataaaatgtataactgaatcataaaaaaaaactggtaattttatcaataaattttaattctttatc |
48588661 |
T |
|
| Q |
300 |
ttagtgtaagagaagtttcatcctcaaataaaattacaattaattaagtcaaacacacatttattctgaaacaaggaacgttctccaaaagatttatgaa |
399 |
Q |
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| T |
48588662 |
ttagtgtaagagaagtttcatcctcaaataaaattacaattaatgaaatcaaacacacatttattctgaaacaaggaacgttctccaaaagatttatgaa |
48588761 |
T |
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| Q |
400 |
agtttatgttcttaactatgaatcaatatcacatcaattatgctgcaattttcatctcac |
459 |
Q |
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| T |
48588762 |
agtttatgttcttaactatgaatcaatatcacatcaattatgctgcaattttcttctcac |
48588821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 48588809 - 48588866
Alignment:
| Q |
120 |
attttcttctcacccgttgtttggtatcttcgactccatttttggctttgttaacctt |
177 |
Q |
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| T |
48588809 |
attttcttctcacctgttgtttggtatcttcaattccatttttggctttgttgacctt |
48588866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 48588404 - 48588439
Alignment:
| Q |
28 |
aactttatatgacaagagatgacactgaattttctt |
63 |
Q |
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| T |
48588404 |
aactttatatgacaagagatgacactgaattttctt |
48588439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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