View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_high_5 (Length: 381)
Name: NF0697_high_5
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 123 - 364
Target Start/End: Original strand, 31226561 - 31226802
Alignment:
| Q |
123 |
ctcatttccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtcttaggcttgacgctcttcaccggagctttcttctttgc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31226561 |
ctcatttccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtcttaggcttgacgctcttcaccggagctttcttctttgc |
31226660 |
T |
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| Q |
223 |
cgccgcaactttctttgctgctggctttacagctgcaattttcttccccggagaagtccttgttgttgtctttgcaacctttgcattaggtttcgctttt |
322 |
Q |
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|||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31226661 |
cgccgcaactttctttgctgctggctttgcagctgcgactttcttccccggagaagtccttgctgttgtctttgcaacctttgcattaggtttcgctttt |
31226760 |
T |
|
| Q |
323 |
gcagcagttttggccttagaagcagcttttgacttggtagca |
364 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
31226761 |
gcagcagttttggccttagaagcagcttttgacttggtagca |
31226802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 123 - 340
Target Start/End: Complemental strand, 31173875 - 31173676
Alignment:
| Q |
123 |
ctcatttccttccccctctcttcacggaaaccttcttcgccggagacttaacagtcttagtcttaggcttgacgctcttcaccggagctttcttctttgc |
222 |
Q |
| |
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|||||||||||||||||||||| | | ||| ||||| ||||||||| |||||||||||||||||||||| ||| ||||||| |||| |||||||||||| |
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| T |
31173875 |
ctcatttccttccccctctcttgatcgcaactttcttagccggagacctaacagtcttagtcttaggcttcacgttcttcactggagttttcttctttgc |
31173776 |
T |
|
| Q |
223 |
cgccgcaactttctttgctgctggctttacagctgcaattttcttccccggagaagtccttgttgttgtctttgcaacctttgcattaggtttcgctttt |
322 |
Q |
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|||||||||| ||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||| |
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| T |
31173775 |
------------------tgctggctttgcagttgcaactttcttccctggagaagtccttgtcgttgtctttgcaacctttgcattaggcttcactttc |
31173694 |
T |
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