View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0697_high_6 (Length: 371)
Name: NF0697_high_6
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 31 - 357
Target Start/End: Complemental strand, 9549180 - 9548853
Alignment:
| Q |
31 |
tgtgttaattccccatcaaataaaactaataagttattttgttagattttatattactccaacataacaagattgaatagatcatatgagatgataatta |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9549180 |
tgtgttaattccccatcaaataaaactaataagttattttgttagattttatattactccaacataacaagattgaatagatcatatgagatgataatta |
9549081 |
T |
|
| Q |
131 |
agttatatgtgcgtacctcacaatgtttcattgacgccttgaatcactaactacaatgaaattagacggaaagtttgatcttcgatcaaaatcaagttaa |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9549080 |
agttatatgtgcgtacctcacaatgtttcattgacgccttgaatcactaactacaatgaaattagacggaaagtttgatcttcgatcaaaatcaagttaa |
9548981 |
T |
|
| Q |
231 |
caaaaacattgtgattgtacaaatccatctctaatgtttagtggtaaaatccgtcat-aagtcgggtagaacaaattcagtgagagaagtaagaactgaa |
329 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9548980 |
caaaaacattgtgattgaacaaatctatctctaatgtttagtggtaaaatccgtcataaagtcgggtagaacaaattcagtgagagaagtaagaactgaa |
9548881 |
T |
|
| Q |
330 |
aacattcctctaaaaatattccgccata |
357 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
|
|
| T |
9548880 |
aacattcctctaaaaatattccaccata |
9548853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1407 times since January 2019
Visitors: 4416