View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0697_low_1 (Length: 934)
Name: NF0697_low_1
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_1 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0019 (3 HSPs) |
| | |
|
| [»] scaffold1964 (1 HSPs) |
| | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 812; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 812; E-Value: 0
Query Start/End: Original strand, 1 - 934
Target Start/End: Original strand, 42079241 - 42080173
Alignment:
| Q |
1 |
cctaacaagtaacgaattattgtttttggtactcgtattcctattcttgatgaaccttggctaaataatggtgagcgtattgacggtaatattccaggag |
100 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42079241 |
cctaacaagtaacgaagtattggttttggtactcgtattcctattcttgatgaaccttggctaaataatggtgagcgtattgacggtaatattctaggag |
42079340 |
T |
|
| Q |
101 |
ctcattttgttcgtaatgcctcgataaattatcttttggattcttatgttaaaagttggaatgaacctgttgtgcgtcaagtcttcagtgaggatttagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42079341 |
ctcattttgttcgtaatgcctcgataaattgtcttttggattcttatgttaaaagttggaatgaacctattgtgcgtcaagtcttcagtgaggatttagc |
42079440 |
T |
|
| Q |
201 |
ttttaaaattctcaacacgcctctatttgagcaggttcatcatgataagatgatttggaaagttgaaaagaatggtcattattcggtgcgtagtgcttac |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
42079441 |
ttttaaaattctcaacacgcctctatttgagcaggttcatcatgataagatgatttggaaagttgaaaagaatggtcgttatttggtgcgtagtgcttac |
42079540 |
T |
|
| Q |
301 |
cgtttgtgtgttactgagttagtggacttattacatcttcatcgtccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatt |
400 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42079541 |
cggttgtgtgttactgagttagcggacttattacatcttcatcgtccggggtattggtcgggaatttggaagctcaaatctccgtcaaaggttaagaatt |
42079640 |
T |
|
| Q |
401 |
tgatatggcggatgtgacgaggctgcctaccaacccgtgttcgacttcttgataaaggcgttcaatatccgacccaatgtgttagctgtgattctaatca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42079641 |
tgatatggcggatgtgacgaggctgcctaccaacccgtgttcgacttcttgataaaggcgttcaatattcgacccaatgtgttagctgtgattctaatca |
42079740 |
T |
|
| Q |
501 |
tgaagatttagctcacattttttccgaatgtccttttgctgttcaggtttggtctatggcaggtatatggcatgaaattcagaatgtagtagcaacatct |
600 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42079741 |
tgaagatttagctcacattttttccaaatgtccttttgctgttcaggtttggtctatgacaggtatatggcatgaaattcagaatgtagtagcaacatct |
42079840 |
T |
|
| Q |
601 |
cctttggctattaaagttattttctccttgttgcattctttatctaccacactttcttaaaggatgactacaannnnnnnggagtatttggaagcatagg |
700 |
Q |
| |
|
|||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
42079841 |
ccttcggctattgaagttattttctcctttttgcattctttatctaccacactttcttaaaggatggctacaa-ttttttggagtatttggaagcatagg |
42079939 |
T |
|
| Q |
701 |
aatgtcaaagtgtaggaagacaaaacataaacctgtgcaacggtggttgaaagagctaggtccatggtagaagattggaagctcgcggatgttccatgtt |
800 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
42079940 |
aatgtcaaagtgtgggaagacaaaacataaacttgtgcaacggtggttgaaagagctaggtccatgttagaagattggaagctcgcgaatgttccatgtt |
42080039 |
T |
|
| Q |
801 |
ccaacgtgcaagctgcgcctactgctaatcatattacagcagctgctcacgtaactcctactgtcacgactactgttcaggttcgttggctgccacctgc |
900 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
42080040 |
ccaacgtgcaagctgcgcctactgctaatcatattacaacagctgctcacgtaactcctactgtcacgactactgttcaggttcgttggcagcctcctgc |
42080139 |
T |
|
| Q |
901 |
gcaaggtcaaatgaaatgtaatattgacgccgtg |
934 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42080140 |
gcaaggtcaaatgaaatgtaatattgacgccgtg |
42080173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 346 - 461
Target Start/End: Original strand, 35284158 - 35284273
Alignment:
| Q |
346 |
ccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgttcgac |
445 |
Q |
| |
|
|||||||||||||| || |||||||| || ||| |||| || |||||||||||||| || ||||| ||||| || || || ||||||||||| || || | |
|
|
| T |
35284158 |
ccggggtattggtcaggcatttggaaccttaaagctccaccgaaggttaagaatttaatctggcgtatgtgccggggatgtctaccaacccgcgtacgtc |
35284257 |
T |
|
| Q |
446 |
ttcttgataaaggcgt |
461 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
35284258 |
tgttggataaaggcgt |
35284273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 783
Target Start/End: Complemental strand, 17393320 - 17392571
Alignment:
| Q |
30 |
tactcgtattcctattcttgatgaaccttggctaaataatggtgagcgtattgacggtaatattccaggagctcattttgttcgtaatgcctcgataaat |
129 |
Q |
| |
|
|||| |||||||||| ||||||||||||| | | ||||||||||| |||||||| ||||||| ||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
17393320 |
tacttgtattcctatccttgatgaaccttcgttgcataatggtgagtgtattgacaataatatttcaggagctcattttgtttgtaatgcttcgataaat |
17393221 |
T |
|
| Q |
130 |
tatcttttggattcttatgttaaaagttggaatgaacctgttgtgcgtcaagtcttcagtgaggatttagcttttaaaattctcaacacgcctctatttg |
229 |
Q |
| |
|
| |||||||||| |||||||||||||||| |||||||||| ||| || |||||||||||||| || ||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
17393220 |
tgtcttttggatacttatgttaaaagttgtaatgaacctgctgttcgacaagtcttcagtgatgacttagcttctaaaattctcaacacacctctaattg |
17393121 |
T |
|
| Q |
230 |
agcaggttcatcatgataagatgatttggaaagttgaaaagaatggtcattattcggtgcgtagtgcttaccgtttgtgtgttactgagttagtggactt |
329 |
Q |
| |
|
|||| | ||| ||||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||||||| || || |
|
|
| T |
17393120 |
agcaagctcaacatgatatgatgatttggaaagctgaaaagaatggtcgttattcagtgcgtagtgcttaccggttgtgtgttaccgagttagtagattt |
17393021 |
T |
|
| Q |
330 |
attacatcttcatcgtccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgccta |
429 |
Q |
| |
|
|| ||||||| || ||||||||||||||||||| |||||||| |||| |||||| ||||||||||| |||||||||| ||||||||| |||||||| || |
|
|
| T |
17393020 |
atcacatctttattgtccggggtattggtcggggatttggaaactcatatctcctccaaaggttaaaaatttgatatagcggatgtgttgaggctgctta |
17392921 |
T |
|
| Q |
430 |
ccaacccgtgttcgacttcttgataaaggcgttcaatatccgacccaatgtgttagctgtgattctaatcatgaagatttagctcacattttttccgaat |
529 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| ||| ||| | |||||||| ||||| ||||||||||| ||||| | ||| ||||| | |||| |
|
|
| T |
17392920 |
ccaacttgtgttcgacttcttgataaaggcattcaatgtcctacctagtgtgttagttgtgactctaatcatgatgattttggtcatattttat--gaat |
17392823 |
T |
|
| Q |
530 |
gtccttttgctgttcaggtttggtctatggcaggtatatggcatgaaattcagaatgtagtagcaacatctcctttggctattaaagttattttctcctt |
629 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||| | | | ||||||||||| | ||||| ||| ||| ||||| || |
|
|
| T |
17392822 |
gtccttttgttgttccagtttggtctatgacaggtatgtggcacaaaattcagaatgcaatcgaaacatctccttcgactattgaagctatcttctcatt |
17392723 |
T |
|
| Q |
630 |
gttgcattctttatctaccacactttcttaaaggatgactacaannnnnnnggagtatttggaagcataggaatgtcaaagtgtaggaagacaaaacata |
729 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||||||| | | | |||| |||||||||||||||||||| ||||||| ||| ||| ||||||| |
|
|
| T |
17392722 |
gttgcattctttatctgccacgctttctcaaaggatggc-agcactattttggagcatttggaagcataggaatgttaaagtgtgggatgacgaaacata |
17392624 |
T |
|
| Q |
730 |
aacctgtgcaacggtggttgaaagagctaggtccatggtagaagattggaagct |
783 |
Q |
| |
|
||| |||| | ||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
17392623 |
aacttgtgtgatggtggttgaaagagctaggtccatggt-gaatattggaagct |
17392571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 95 - 235
Target Start/End: Original strand, 18690113 - 18690253
Alignment:
| Q |
95 |
caggagctcattttgttcgtaatgcctcgataaattatcttttggattcttatgttaaaagttggaatgaacctgttgtgcgtcaagtcttcagtgagga |
194 |
Q |
| |
|
|||||||| ||||||| | |||| ||||||||| |||| ||||| ||||| | ||| | ||||| ||||||||||| || ||||| ||||||||||| |
|
|
| T |
18690113 |
caggagctaattttgtgaatcatgcttcgataaatagtcttatggatccttatttcaaacggtggaacgaacctgttgtccgacaagttttcagtgagga |
18690212 |
T |
|
| Q |
195 |
tttagcttttaaaattctcaacacgcctctatttgagcagg |
235 |
Q |
| |
|
|||||||| ||||||||| ||||| ||| |||||||||||| |
|
|
| T |
18690213 |
tttagcttctaaaattcttaacacccctttatttgagcagg |
18690253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 346 - 443
Target Start/End: Original strand, 9958351 - 9958448
Alignment:
| Q |
346 |
ccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgttcg |
443 |
Q |
| |
|
|||||||||||||| || |||||||| || ||| ||| || |||||||||||||| || ||||| ||||| ||||| || |||||||||||||||| |
|
|
| T |
9958351 |
ccggggtattggtctggtatttggaaccttaaagttccaccgaaggttaagaatttaatttggcgtatgtgtcgaggatgtttaccaacccgtgttcg |
9958448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 571
Target Start/End: Complemental strand, 30141876 - 30141837
Alignment:
| Q |
532 |
ccttttgctgttcaggtttggtctatggcaggtatatggc |
571 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
30141876 |
ccttttgctgttcaggtctggtctatggcaggtttatggc |
30141837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 272; Significance: 1e-151; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 27 - 787
Target Start/End: Original strand, 42890 - 43649
Alignment:
| Q |
27 |
tggtactcgtattcctattcttgatgaaccttggctaaataatggtgagcgtattgacggtaatattccaggagctcattttgttcgtaatgcctcgata |
126 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| | ||| | |||||||||||||| ||||| |||| |||||||||||||||||||||| |||||| |
|
|
| T |
42890 |
tggtacttgtattcctatccttgatgaaccttggttgcatactagtgagcgtattgacaataatactccatgagctcattttgttcgtaatgcttcgata |
42989 |
T |
|
| Q |
127 |
aattatcttttggattcttatgttaaaagttggaatgaacctgttgtgcgtcaagtcttcagtgaggatttagcttttaaaattctcaacacgcctctat |
226 |
Q |
| |
|
|||| |||| ||||| ||| | |||||||||||||||||||| |||| || ||||| || |||||||||||||||| |||||||||||||| ||||| || |
|
|
| T |
42990 |
aattgtcttgtggatccttctattaaaagttggaatgaaccttttgttcgacaagtatttagtgaggatttagcttctaaaattctcaacatgcctccat |
43089 |
T |
|
| Q |
227 |
ttgagcaggttcatcatgataagatgatttggaaagttgaaaagaatggtcattattcggtgcgtagtgcttaccgtttgtgtgttactgagttagtgga |
326 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||| |||||||||||| | |||||||||||||||||| || | |||||||| || | || | || |
|
|
| T |
43090 |
ttgagcaggttcaacatgatagaatgatttggaaagctgaaaagaatggacgttattcggtgcgtagtgcctatctgttgtgtgtcacaaaactaataga |
43189 |
T |
|
| Q |
327 |
cttattacatcttcatcgtccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgc |
426 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||||||||||||||| |||||| ||| |||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43190 |
tttatcgcatcttcaccttccggggtattggtcgggaatttggaagctgaaatcttcgcaaaagattaagaatttgatatggcggatgtgtcgaggctgc |
43289 |
T |
|
| Q |
427 |
ctaccaacccgtgttcgacttcttgataaaggcgttcaatatccgacccaatgtgttagctgtgattctaatcatgaagatttagctcacattttttccg |
526 |
Q |
| |
|
|||||||| |||| |||||||||||||||| | | ||| | | || || |||||||| ||||| ||||||||||| |||||||||||||| || | || |
|
|
| T |
43290 |
ttaccaacctgtgtccgacttcttgataaagacttctaatgttctactcagtgtgttagttgtgagtctaatcatgaggatttagctcacatattcttcg |
43389 |
T |
|
| Q |
527 |
aatgtccttttgctgttcaggtttggtctatggcaggtatatggcatgaaattcagaatgtagtagcaacatctcctttggctattaaagttattttctc |
626 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||| || ||||||||||||||||||| ||| | ||||||||||| ||||| | || ||||||||| |
|
|
| T |
43390 |
aatgtccttttgctgtacaggtttggtcgatggcagaaatgtggcatgaaattcagaatgcagtggtaacatctccttcggctaatgaatctattttctc |
43489 |
T |
|
| Q |
627 |
cttgttgcattctttatctaccacactttcttaaaggatgactacaannnnnnnggagtatttggaagcataggaatgtcaaagtgtaggaagacaaaac |
726 |
Q |
| |
|
||||| |||||||| ||| || ||| || | ||| || | | |||| | ||||| ||||||||||||||| ||| |||||||| ||| |
|
|
| T |
43490 |
tttgttctgctctttatcagtcacgctctctcaacgaatggctgc-actactttggagcttgtggaaacataggaatgtcaaattgtgggaagacataac |
43588 |
T |
|
| Q |
727 |
ataaacctgtgcaacggtggttgaaagagctaggtccatggtagaagattggaagctcgcg |
787 |
Q |
| |
|
| |||| ||||| | |||||||| |||||||||||||||| || |||||| |||||||| |
|
|
| T |
43589 |
agaaacttgtgcgatggtggttggttgagctaggtccatggttgaggattggcagctcgcg |
43649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 349 - 785
Target Start/End: Original strand, 14994157 - 14994592
Alignment:
| Q |
349 |
gggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgttcgacttc |
448 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |||||| || |||| ||| |
|
|
| T |
14994157 |
gggtattggttgggaatttgaaagctcaaatctccgtcaaaggttaagaatttgatatggtagatgtgtcgaggctgcctatcaacccatgctcgatttc |
14994256 |
T |
|
| Q |
449 |
ttgataaaggcgttcaatatccgacccaatgtgttagctgtgattctaatcatgaagatttagctcacattttttccgaatgtccttttgctgttcaggt |
548 |
Q |
| |
|
||| |||||| ||||||| ||| || || |||||||| ||||| |||||| |||| |||||||||||||| |||| |||||||| ||||||| ||| || |
|
|
| T |
14994257 |
ttggtaaaggtgttcaatgtcctactcagtgtgttagttgtgactctaattatgaggatttagctcacatctttttcgaatgtcattttgctattccagt |
14994356 |
T |
|
| Q |
549 |
ttggtctatggcaggtatatggcatgaaattcagaatgtagtagcaacatctcctttggctattaaagttattttctccttgttgcattctttatctacc |
648 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| |||| ||| ||||||||||||| | |||| ||| ||||||||| ||||||||||||||||| || |
|
|
| T |
14994357 |
ttggtctatggcaggtatgtggcacaaaattcataatgcagtggcaacatctccttcgtttattgaagctattttctcattgttgcattctttatccgcc |
14994456 |
T |
|
| Q |
649 |
acactttcttaaaggatgactacaannnnnnnggagtatttggaagcataggaatgtcaaagtgtaggaagacaaaacataaacctgtgcaacggtggtt |
748 |
Q |
| |
|
||||||||| ||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||| ||| |||| | ||| ||||||||| |
|
|
| T |
14994457 |
acactttctcaaaggatgactgc-actattttggagtatttggaagcataggaatgtcaaagtgtgcgaagacatcacagaaacttatgcgacggtggtt |
14994555 |
T |
|
| Q |
749 |
gaaagagctaggtccatggtagaagattggaagctcg |
785 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
14994556 |
gaaagagttaggtcgatggtagaagattggaagctcg |
14994592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 157 - 581
Target Start/End: Complemental strand, 2974778 - 2974354
Alignment:
| Q |
157 |
tggaatgaacctgttgtgcgtcaagtcttcagtgaggatttagcttttaaaattctcaacacgcctctatttgagcaggttcatcatgataagatgattt |
256 |
Q |
| |
|
||||| ||| ||||||| || |||||||| |||||||| || ||| ||||||||| ||||| ||||| |||||||||||||| ||||| | | | ||| |
|
|
| T |
2974778 |
tggaacgaatctgttgtccgacaagtctttagtgaggacttggctgctaaaattcttaacacccctctctttgagcaggttcagcatgacacgttacttt |
2974679 |
T |
|
| Q |
257 |
ggaaagttgaaaagaatggtcattattcggtgcgtagtgcttaccgtttgtgtgttactgagttagtggacttattacatcttcatcgtccggggtattg |
356 |
Q |
| |
|
|||| | ||| |||||||| | ||||||||||||||||||||||| ||||||| | ||||||||| || || | || ||||| | ||| ||||| |
|
|
| T |
2974678 |
ggaaggctgagaagaatgggcgttattcggtgcgtagtgcttaccaactgtgtgtcaatgagttagtagatttgtcccaccttcacaaactgggatattg |
2974579 |
T |
|
| Q |
357 |
gtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgttcgacttcttgataaa |
456 |
Q |
| |
|
| | || ||||||||||| ||| |||| || || ||||| ||| |||| ||||| ||||| || ||||| |||||||||||||||| | | |||||| |
|
|
| T |
2974578 |
gactggcatttggaagcttaaaactcccccgaaagttaaaaatctgatttggcgtatgtgtcggggctgtttaccaacccgtgttcggttgttggataaa |
2974479 |
T |
|
| Q |
457 |
ggcgttcaatatccgacccaatgtgttagctgtgattctaatcatgaagatttagctcacattttttccgaatgtccttttgctgttcaggtttggtcta |
556 |
Q |
| |
|
|| ||||||| ||| || | || || || ||||| ||||||||||| |||||| |||| | |||| || || ||||||| |||||||| || |||| |
|
|
| T |
2974478 |
ggtgttcaatttcctactcggtgcgtaagttgtgactctaatcatgaggatttatctcatgtattttttgagtgctcttttgcagttcaggtatgctcta |
2974379 |
T |
|
| Q |
557 |
tggcaggtatatggcatgaaattca |
581 |
Q |
| |
|
|| |||| |||||||||| ||||| |
|
|
| T |
2974378 |
cggtaggtttatggcatgagattca |
2974354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 343 - 440
Target Start/End: Original strand, 11501444 - 11501541
Alignment:
| Q |
343 |
cgtccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgt |
440 |
Q |
| |
|
||||||||||||||||| || |||||||| || ||| ||| || |||||||||||||| || ||||| ||||| |||||||| || || |||||||| |
|
|
| T |
11501444 |
cgtccggggtattggtctggtatttggaaacttaaagttcctccgaaggttaagaatttaatttggcgtatgtgtcgaggctgtcttccgacccgtgt |
11501541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 158; Significance: 1e-83; HSPs: 3)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 314 - 515
Target Start/End: Complemental strand, 73878 - 73677
Alignment:
| Q |
314 |
ctgagttagtggacttattacatcttcatcgtccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggat |
413 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
73878 |
ctgagttagtggacttaccacatcttcatcgttcggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggat |
73779 |
T |
|
| Q |
414 |
gtgacgaggctgcctaccaacccgtgttcgacttcttgataaaggcgttcaatatccgacccaatgtgttagctgtgattctaatcatgaagatttagct |
513 |
Q |
| |
|
|| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
73778 |
gtatcgaggctacctaccaacatatgttcgacttcttgataaaggcgttcaatgtccgacccagtgtgttagctgtgattctaatcatgaagatttagct |
73679 |
T |
|
| Q |
514 |
ca |
515 |
Q |
| |
|
|| |
|
|
| T |
73678 |
ca |
73677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 132 - 262
Target Start/End: Complemental strand, 74009 - 73879
Alignment:
| Q |
132 |
tcttttggattcttatgttaaaagttggaatgaacctgttgtgcgtcaagtcttcagtgaggatttagcttttaaaattctcaacacgcctctatttgag |
231 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
74009 |
tcttttggatccttatattaaaagttggaatgaatctgttgtgcaccaagtcttcagtgaggatttaacttctaaaattctcaacacgcctctgtttgag |
73910 |
T |
|
| Q |
232 |
caggttcatcatgataagatgatttggaaag |
262 |
Q |
| |
|
| ||||||||||||||| ||||||||||||| |
|
|
| T |
73909 |
cgggttcatcatgataacatgatttggaaag |
73879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 601
Target Start/End: Complemental strand, 73662 - 73605
Alignment:
| Q |
544 |
caggtttggtctatggcaggtatatggcatgaaattcagaatgtagtagcaacatctc |
601 |
Q |
| |
|
||||||||||||||| || ||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
73662 |
caggtttggtctatgacatgtatatgacatgaaattcagaatgcagtagcaacatctc |
73605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 156; Significance: 2e-82; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 486 - 930
Target Start/End: Complemental strand, 13949668 - 13949225
Alignment:
| Q |
486 |
ctgtgattctaatcatgaagatttagctcacattttttccgaatgtccttttgctgttcaggtttggtctatggcaggtatatggcatgaaattcagaat |
585 |
Q |
| |
|
|||||| | ||||||||| |||||| |||||||||||| ||||| |||| |||||||||||||||||||| || |||| | ||| |||||||| ||| |
|
|
| T |
13949668 |
ctgtgactttaatcatgaggatttacctcacatttttttttaatgtttttttactgttcaggtttggtctatgacatgtatgtagcacgaaattcataat |
13949569 |
T |
|
| Q |
586 |
gtagtagcaacatctcctttggctattaaagttattttctccttgttgcattctttatctaccacactttcttaaaggatgactacaannnnnnnggagt |
685 |
Q |
| |
|
| | | |||||||||| |||||||||| ||| |||||| ||||||||||||||||||||| ||| | ||||||||||||| || || ||||| |
|
|
| T |
13949568 |
gcaatggcaacatctcttttggctattgaagctattttttccttgttgcattctttatctttcacgcattcttaaaggatggctgca-cttttttggagt |
13949470 |
T |
|
| Q |
686 |
atttggaagcataggaatgtcaaagtgtaggaagacaaaacataaacctgtgcaacggtggttgaaagagctaggtccatggtagaagattggaagctcg |
785 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| |||| |||| | ||| || ||||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
13949469 |
atttggaagcataggaatgtcaaagtgtgggaaaacataacagaaacttatgcgacagtggttgaaagagctaggttcatggttgaagattggaagctcg |
13949370 |
T |
|
| Q |
786 |
cggatgttccatgttccaacgtgcaagctgcgcctactgctaatcatattacagcagctgctcacgtaactcctactgtcacgactactgttcaggttcg |
885 |
Q |
| |
|
| |||| || ||| |||| | ||||| || |||||||||| |||||||| | |||||||||||| |||| || || ||||| |||| ||||||||||| |
|
|
| T |
13949369 |
tgaatgtcccttgtaccaatgggcaagttgtgcctactgctggtcatattataacagctgctcacgcaacttctgctatcacggctaccgttcaggttcg |
13949270 |
T |
|
| Q |
886 |
ttggctgccacctgcgcaaggtcaaatgaaatgtaatattgacgc |
930 |
Q |
| |
|
||||| ||| || ||||||||| ||||| |||| |||||||||| |
|
|
| T |
13949269 |
ttggcagcctcccgcgcaaggttgaatgatatgtgatattgacgc |
13949225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 334 - 645
Target Start/End: Complemental strand, 27394065 - 27393754
Alignment:
| Q |
334 |
catcttcatcgtccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaa |
433 |
Q |
| |
|
|||||||| |||| |||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
27394065 |
catcttcaccgtctcgggtattgatcgagaatttggaagctcaaatctccgtcaaagggtaagaatttgatatggtggatgtgtcgaggctgcttaccaa |
27393966 |
T |
|
| Q |
434 |
cccgtgttcgacttcttgataaaggcgttcaatatccgacccaatgtgttagctgtgattctaatcatgaagatttagctcacattttttccgaatgtcc |
533 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||| ||| || | ||||| || ||||| ||||||||||| |||| |||||| || |||| ||||||||| |
|
|
| T |
27393965 |
cccgtgttctatttcttaataaaggcgttcaatgtcctacttagtgtgtaagttgtgactctaatcatgaggattgagctcatatatttttcgaatgtcc |
27393866 |
T |
|
| Q |
534 |
ttttgctgttcaggtttggtctatggcaggtatatggcatgaaattcagaatgtagtagcaacatctcctttggctattaaagttattttctccttgttg |
633 |
Q |
| |
|
||||| ||| | |||||||||||||| ||||| |||| || |||||| ||||| || | ||| | | ||| | ||| ||||| ||||||||| || ||| |
|
|
| T |
27393865 |
ttttgatgtatatgtttggtctatggcgggtatgtggcctggaattcaaaatgtcgtggtaacgttttcttcgactactaaagctattttctctttattg |
27393766 |
T |
|
| Q |
634 |
cattctttatct |
645 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
27393765 |
cactctttatct |
27393754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 120 - 295
Target Start/End: Original strand, 26679609 - 26679784
Alignment:
| Q |
120 |
ctcgataaattatcttttggattcttatgttaaaagttggaatgaacctgttgtgcgtcaagtcttcagtgaggatttagcttttaaaattctcaacacg |
219 |
Q |
| |
|
|||||||||| |||| | ||| |||| ||||| ||||||| |||| |||||| | |||||||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
26679609 |
ctcgataaatagtcttatagatccttactttaaacgttggaacgaacatgttgtttgacaagtctttagcgaggatttagcttctaaaattctcaacaca |
26679708 |
T |
|
| Q |
220 |
cctctatttgagcaggttcatcatgataagatgatttggaaagttgaaaagaatggtcattattcggtgcgtagtg |
295 |
Q |
| |
|
||||||||| |||||||| ||||||| | | ||||||| | | | |||||||| | |||||| |||||||||| |
|
|
| T |
26679709 |
tatctatttgaacaggttcaacatgatacgttactttggaatgctaagaagaatgggcgttattcagtgcgtagtg |
26679784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 120 - 295
Target Start/End: Original strand, 26951216 - 26951391
Alignment:
| Q |
120 |
ctcgataaattatcttttggattcttatgttaaaagttggaatgaacctgttgtgcgtcaagtcttcagtgaggatttagcttttaaaattctcaacacg |
219 |
Q |
| |
|
|||||||||| |||| | ||| |||| ||||| ||||||| |||| |||||| | |||||||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
26951216 |
ctcgataaatagtcttatagatccttactttaaacgttggaacgaacatgttgtttgacaagtctttagcgaggatttagcttctaaaattctcaacaca |
26951315 |
T |
|
| Q |
220 |
cctctatttgagcaggttcatcatgataagatgatttggaaagttgaaaagaatggtcattattcggtgcgtagtg |
295 |
Q |
| |
|
||||||||| |||||||| ||||||| | | ||||||| | | | |||||||| | |||||| |||||||||| |
|
|
| T |
26951316 |
tatctatttgaacaggttcaacatgatacgttactttggaatgctaagaagaatgggcgttattcagtgcgtagtg |
26951391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 380 - 571
Target Start/End: Original strand, 26682175 - 26682366
Alignment:
| Q |
380 |
ctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgttcgacttcttgataaaggcgttcaatatccgacccaatg |
479 |
Q |
| |
|
||||||| |||||||| ||| | || ||||| |||| || || || |||||||| |||||||| ||||||||||||||||| | | ||| || || || |
|
|
| T |
26682175 |
ctccgccgaaggttaaaaatcttatttggcgtatgtttcggggttgtctaccaactcgtgttcggtttcttgataaaggcgttaattgtcccactcagtg |
26682274 |
T |
|
| Q |
480 |
tgttagctgtgattctaatcatgaagatttagctcacattttttccgaatgtccttttgctgttcaggtttggtctatggcaggtatatggc |
571 |
Q |
| |
|
|| || ||||| ||||||||||| |||||| |||| || |||| ||| || |||||| |||||| ||| |||||||| ||| || |||||| |
|
|
| T |
26682275 |
tgaaagttgtgactctaatcatgaggatttaactcatatatttttcgattgccctttttctgttcgggtatggtctatcgcaagtttatggc |
26682366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 689 - 784
Target Start/End: Complemental strand, 27393711 - 27393616
Alignment:
| Q |
689 |
tggaagcataggaatgtcaaagtgtaggaagacaaaacataaacctgtgcaacggtggttgaaagagctaggtccatggtagaagattggaagctc |
784 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| |||| | || | ||| ||||||||||| ||| |||||||||||| || |||||| ||||| |
|
|
| T |
27393711 |
tggaaacataggaatgtcaaagtgtgggaagacataacaaagacttatgcgacggtggttgaccgagttaggtccatggttgaggattggcagctc |
27393616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 274 - 311
Target Start/End: Original strand, 27492280 - 27492317
Alignment:
| Q |
274 |
ggtcattattcggtgcgtagtgcttaccgtttgtgtgt |
311 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
27492280 |
ggtcattattcggttcgtagtgcttaccgtttatgtgt |
27492317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 4e-25; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 380 - 571
Target Start/End: Complemental strand, 12371828 - 12371637
Alignment:
| Q |
380 |
ctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgttcgacttcttgataaaggcgttcaatatccgacccaatg |
479 |
Q |
| |
|
||||||| |||||||| |||||||| |||| ||||| || || || ||| |||| |||||||| | ||||||||||||||| | | ||| || || || |
|
|
| T |
12371828 |
ctccgccgaaggttaaaaatttgatttggcatatgtgtcgggggtgtctatcaactcgtgttcggttgcttgataaaggcgttaattgtcccactcagtg |
12371729 |
T |
|
| Q |
480 |
tgttagctgtgattctaatcatgaagatttagctcacattttttccgaatgtccttttgctgttcaggtttggtctatggcaggtatatggc |
571 |
Q |
| |
|
||| || ||||| ||||||||||| ||||||||||| || |||| ||| | ||||||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
12371728 |
tgtaagttgtgactctaatcatgaggatttagctcatatatttttcgatttcccttttgctgttcgggtatggtctatggcaggtttatggc |
12371637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 256 - 516
Target Start/End: Original strand, 49498430 - 49498690
Alignment:
| Q |
256 |
tggaaagttgaaaagaatggtcattattcggtgcgtagtgcttaccgtttgtgtgttactgagttagtggacttattacatcttcatcgtccggggtatt |
355 |
Q |
| |
|
||||||| ||||| ||||||| |||||| || ||||||||||| || | ||||||| ||||||| | || | | ||||| | |||||| || | || |
|
|
| T |
49498430 |
tggaaagcagaaaaaaatggtcgttattctgtacgtagtgcttatcggctatgtgttaatgagttaattgattcttctcatctccgtcgtccaggttctt |
49498529 |
T |
|
| Q |
356 |
ggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgttcgacttcttgataa |
455 |
Q |
| |
|
|||| |||||||||||||| ||| ||| || || ||||| ||||| | ||||| ||||| || |||||||||||||| |||||||| || ||||| || |
|
|
| T |
49498530 |
ggtcaggaatttggaagcttaaagttcctcctaaagttaaaaatttagtgtggcgtatgtgtcggggctgcctaccaactcgtgttcgtctccttgacaa |
49498629 |
T |
|
| Q |
456 |
aggcgttcaatatccgacccaatgtgttagctgtgattctaatcatgaagatttagctcac |
516 |
Q |
| |
|
||| || |||| | | || || |||||||| ||| | || || ||||||||| | |||||| |
|
|
| T |
49498630 |
aggagtccaatgttctacacattgtgttagttgtaactcgaaccatgaagatcttgctcac |
49498690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 346 - 461
Target Start/End: Original strand, 31808286 - 31808401
Alignment:
| Q |
346 |
ccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgttcgac |
445 |
Q |
| |
|
|||||||||||||| || |||||||| || ||| ||| || |||||||||||||| || ||||| ||||| || || || |||||||||||||| || | |
|
|
| T |
31808286 |
ccggggtattggtctggtatttggaaccttaaagttccaccgaaggttaagaatttaatttggcgtatgtgtcgcggatgtctaccaacccgtgtacgtc |
31808385 |
T |
|
| Q |
446 |
ttcttgataaaggcgt |
461 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
31808386 |
tgttggataaaggcgt |
31808401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 343 - 440
Target Start/End: Original strand, 31951043 - 31951140
Alignment:
| Q |
343 |
cgtccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgt |
440 |
Q |
| |
|
|||| |||||||||||| || |||||||| || ||| ||| || |||||||||||||| || ||||| ||||| ||||| || ||||||||||||| |
|
|
| T |
31951043 |
cgtctggggtattggtctggtatttggaaccttaaagttccaccgaaggttaagaatttaatttggcgcatgtgtcgaggatgattaccaacccgtgt |
31951140 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 346 - 439
Target Start/End: Original strand, 8565138 - 8565231
Alignment:
| Q |
346 |
ccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtg |
439 |
Q |
| |
|
|||||||||||||| || |||||||| || ||| ||| || |||||||||||||| || ||||| ||||| || || || ||||| ||||||| |
|
|
| T |
8565138 |
ccggggtattggtctggtatttggaatcttaaagttccaccgaaggttaagaatttaatttggcgtatgtgtcgtggatgtctacccacccgtg |
8565231 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 343 - 440
Target Start/End: Original strand, 31934385 - 31934482
Alignment:
| Q |
343 |
cgtccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgt |
440 |
Q |
| |
|
|||| |||||||||||| || |||||||| || ||| ||| || |||||||||||||| || ||||| ||||| ||||| || |||| |||||||| |
|
|
| T |
31934385 |
cgtctggggtattggtctggtatttggaaccttaaagttccaccgaaggttaagaatttaatttggcgcatgtgtcgaggatgtttaccgacccgtgt |
31934482 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 157 - 571
Target Start/End: Original strand, 12354094 - 12354508
Alignment:
| Q |
157 |
tggaatgaacctgttgtgcgtcaagtcttcagtgaggatttagcttttaaaattctcaacacgcctctatttgagcaggttcatcatgataagatgattt |
256 |
Q |
| |
|
||||||| |||||||| || ||||| || |||||||||||||||| |||||| || ||||| ||||| |||||||||||||| ||||||| | |||| |
|
|
| T |
12354094 |
tggaatgttcctgttgtccgacaagtttttagtgaggatttagcttctaaaatccttaacactcctctttttgagcaggttcaacatgatactcttattt |
12354193 |
T |
|
| Q |
257 |
ggaaagttgaaaagaatggtcattattcggtgcgtagtgcttaccgtttgtgtgttactgagttagtggacttattacatcttcatcgtccggggtattg |
356 |
Q |
| |
|
|||| | |||||||||| | || || || ||||||||||||| || ||||| | ||||||||| || || | || |||||| ||||| ||||| |
|
|
| T |
12354194 |
ggaaggccaaaaagaatgggcgctactctatgtgtagtgcttaccgcttatgtgtcagtgagttagtagatttgtcccaccttcataaaccgggatattg |
12354293 |
T |
|
| Q |
357 |
gtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgttcgacttcttgataaa |
456 |
Q |
| |
|
| ||||||||||| || ||| | || || || ||||| ||| |||| ||||| ||||| || |||| |||||||| |||||| | | |||||| |
|
|
| T |
12354294 |
gaatggaatttggaaacttaaaacccccccgaaagttaaaaatctgatttggcgtatgtgtcggagctgtttaccaacctatgttcgtttgttggataaa |
12354393 |
T |
|
| Q |
457 |
ggcgttcaatatccgacccaatgtgttagctgtgattctaatcatgaagatttagctcacattttttccgaatgtccttttgctgttcaggtttggtcta |
556 |
Q |
| |
|
|| ||||| | | | || || ||||| | ||||||||||||||||| |||||| |||| | |||| || || |||||| ||||||||| ||||||| |
|
|
| T |
12354394 |
ggtgttcattgtaccactcagtgtgtaaattgtgattctaatcatgaggatttaactcatgtattttttgagtgccctttttttgttcaggtctggtcta |
12354493 |
T |
|
| Q |
557 |
tggcaggtatatggc |
571 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
12354494 |
tggcaggtttatggc |
12354508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 346 - 461
Target Start/End: Complemental strand, 8119815 - 8119700
Alignment:
| Q |
346 |
ccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgttcgac |
445 |
Q |
| |
|
|||||||||||||| || |||||||| || ||| ||| || |||||||||||||| || ||||| ||||| || || || |||||||||||||| || | |
|
|
| T |
8119815 |
ccggggtattggtctggtatttggaaccttaaagttccaccgaaggttaagaatttaatttggcgtatgtgccgtggatgtctaccaacccgtgtacgtc |
8119716 |
T |
|
| Q |
446 |
ttcttgataaaggcgt |
461 |
Q |
| |
|
| | ||||||||||| |
|
|
| T |
8119715 |
tgttggataaaggcgt |
8119700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1964 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1964
Description:
Target: scaffold1964; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 451 - 581
Target Start/End: Original strand, 241 - 371
Alignment:
| Q |
451 |
gataaaggcgttcaatatccgacccaatgtgttagctgtgattctaatcatgaagatttagctcacattttttccgaatgtccttttgctgttcaggttt |
550 |
Q |
| |
|
|||||||| ||||||| ||| || || || || || ||||| ||||||||||| |||||| |||| | |||| || || ||||||| |||||||| | |
|
|
| T |
241 |
gataaaggtgttcaatgtcccactcagtgcgtaagttgtgactctaatcatgaggatttatctcatgtattttttgagtgctcttttgcagttcaggtat |
340 |
T |
|
| Q |
551 |
ggtctatggcaggtatatggcatgaaattca |
581 |
Q |
| |
|
| |||||||||||| |||||||||| ||||| |
|
|
| T |
341 |
gatctatggcaggtttatggcatgagattca |
371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 346 - 440
Target Start/End: Original strand, 7043 - 7137
Alignment:
| Q |
346 |
ccggggtattggtcgggaatttggaagctcaaatctccgccaaaggttaagaatttgatatggcggatgtgacgaggctgcctaccaacccgtgt |
440 |
Q |
| |
|
|||||||||||||| || |||||||| || ||| ||| || |||||||||||||| || ||| | ||||| ||||| || ||||| |||||||| |
|
|
| T |
7043 |
ccggggtattggtctggtatttggaaccttaaagttccaccgaaggttaagaatttaatttggtgtatgtgtcgaggatgtctaccgacccgtgt |
7137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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