View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_low_12 (Length: 450)
Name: NF0697_low_12
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 38873994 - 38874428
Alignment:
| Q |
1 |
tgttcttctctttttaccaccactggttcttttttctgctgttccttctcacttacttgtgcttctccattcttgtaattgctgcaccacatgctgcttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
38873994 |
tgttcttctctttttaccaccactggttcttttttctgctgttccttctcacctacttgtgtttctccat-cttgtaattgctgcaccacatgctgcttt |
38874092 |
T |
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| Q |
101 |
aagattcattgtagcagtaactcaagtgttgcaacatgagaataaaaagaacca---gcgtagaattgtaaagaaacacattgctgaataaatttcaaca |
197 |
Q |
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| T |
38874093 |
aagattcatagtagcagtaactcaagtgttgcaacatgagtccaaaaagaaccaccagcgtagaattgtaaggaaacacattgctgaataaatttcaaca |
38874192 |
T |
|
| Q |
198 |
cattgcagttcaaggccatattttttatagactagatagaataaggtaactaaaacaca--gaaaaattgagcataaatttgtgcaggagtgatttgtta |
295 |
Q |
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| T |
38874193 |
cattgcagttcaaggccattttttttatagactagttagaataaggtaactaaaacacatagaaaaattgagcataaatttgtgcaggagtgatttgtta |
38874292 |
T |
|
| Q |
296 |
aggtgacagaacaaaccacaattatctttccacttaatcgaaaattactaagacattttgcagaaggcaaggctgtaaattagtataactgatctgaact |
395 |
Q |
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| T |
38874293 |
aggtga--gaacaaaccacagttatctttccacttaatcgaaaattactaagacattttgcagaaggcaaggctgtaaattagtataactgatctgaact |
38874390 |
T |
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| Q |
396 |
tattatgctataataattacttatgaaagtgttacctg |
433 |
Q |
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| T |
38874391 |
tattatgctataataattacttatgaaagtgttacctg |
38874428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 256 - 393
Target Start/End: Complemental strand, 38783340 - 38783203
Alignment:
| Q |
256 |
agaaaaattgagcataaatttgtgcaggagtgatttgttaaggtgacagaacaaaccacaattatctttccacttaatcgaaaattactaagacattttg |
355 |
Q |
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| T |
38783340 |
agaaaaattgaacatacatttgtgcaggagtgatttgttaaggtgccagaacaaaccacagttatctttccacttaatcaaaaattactaagacattttg |
38783241 |
T |
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| Q |
356 |
cagaaggcaaggctgtaaattagtataactgatctgaa |
393 |
Q |
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|||||||||||||||| | ||||||||||||||||||| |
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| T |
38783240 |
cagaaggcaaggctgtgatttagtataactgatctgaa |
38783203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 38776550 - 38776409
Alignment:
| Q |
98 |
tttaagattcattgtagcagtaactcaagtgttgcaacatgagaataaaaagaaccagcgtagaattgtaaagaaacacattgctgaataaatttcaaca |
197 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||||| ||| ||||| |
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| T |
38776550 |
tttaagattcatagtagcagtaactcatgtgttgcaacatgagtctaaaaagaaccagcgtagaattgtaaggaaacgcatttctgaatagattccaaca |
38776451 |
T |
|
| Q |
198 |
cattgcagttcaaggccatattttt-tatagactagatagaa |
238 |
Q |
| |
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|| ||||||| |||||||| ||||| |||||||||||||||| |
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| T |
38776450 |
cactgcagttgaaggccatttttttatatagactagatagaa |
38776409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 256 - 433
Target Start/End: Complemental strand, 38776316 - 38776145
Alignment:
| Q |
256 |
agaaaaattgagcataaatttgtgcaggagtgatttgttaaggtgacagaacaaaccacaattatctttccacttaatcgaaaattacta-agacatttt |
354 |
Q |
| |
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||||||||||| ||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||| ||| ||||| ||||||||| |
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| T |
38776316 |
agaaaaattgaacataaattttcgcaggagtgatatgttaaggtga--gaacaaaccacagttatctttccagttaataaaaatttactttagacatttt |
38776219 |
T |
|
| Q |
355 |
gcagaaggcaaggctgtaaattagtataactgatctgaacttattatgctataataattacttatgaaagtgttacctg |
433 |
Q |
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| T |
38776218 |
gcagaaggc-----tgtgaattagtataaatgatctgaacatattatgctgtaataattacttatgcaagtgttacctg |
38776145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 38776778 - 38776677
Alignment:
| Q |
1 |
tgttcttctctttttaccaccactggttcttttttctgctgttccttctcacttacttgtgcttctccattcttgtaattgctgcaccacatgctgcttt |
100 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
38776778 |
tgttcttctgtttttaccaccactggttcttttttctgttgttccttctcatctacttgtgcttctcca-tcttgcaattgctgcaccacatgctgcttt |
38776680 |
T |
|
| Q |
101 |
aag |
103 |
Q |
| |
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||| |
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| T |
38776679 |
aag |
38776677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 223
Target Start/End: Complemental strand, 38783514 - 38783453
Alignment:
| Q |
162 |
attgtaaagaaacacattgctgaataaatttcaacacattgcagttcaaggccatatttttt |
223 |
Q |
| |
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||||||| |||| ||||||||||||||||||||||||| ||||| |||| ||| |||||| |
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| T |
38783514 |
attgtaaggaaaggcattgctgaataaatttcaacacatcacagttgaaggtcatttttttt |
38783453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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