View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_low_13 (Length: 414)
Name: NF0697_low_13
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 217 - 402
Target Start/End: Original strand, 48857335 - 48857520
Alignment:
| Q |
217 |
taaaaataagcatggacagcttctatgaaggtttgatctaatgatcactacaaaaagnnnnnnnnnnnnnnnnnnatgaaggtttgatataatcaccaca |
316 |
Q |
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| T |
48857335 |
taaaaataagcatggacagcttctatgaaggtttgatctaatgatcactgcaaaaagtttttatttttattttttatgaaggtttgatataatcaccaca |
48857434 |
T |
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| Q |
317 |
aagattttaaaatcaaatgataagttttccaaccttgattctaaaagaactatgaataacctannnnnnnctttacacccaatctg |
402 |
Q |
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| T |
48857435 |
aagattttaaaatcaaatgataagttttccaaccttgattctaaaagaactatgaataacctatttttttctttacacccaatctg |
48857520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 110 - 191
Target Start/End: Original strand, 48857234 - 48857317
Alignment:
| Q |
110 |
aaaactctttttctttctccccc--ttaagtaactaataagttacaatattttccttaatttaactaatgcgtaatatgaacat |
191 |
Q |
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| T |
48857234 |
aaaactctttttctttctcccccctttaagtaactaataagttacaatattttccttaatttaactaatgcataatatgaacat |
48857317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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