View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_low_14 (Length: 400)
Name: NF0697_low_14
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 176 - 372
Target Start/End: Original strand, 24812971 - 24813167
Alignment:
| Q |
176 |
caaaataaataaataaaagaatttatatatgtaactggtgaacatgcttagttgaccttatgaagatctagtagggccatgttaacttggtcttctaatt |
275 |
Q |
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| T |
24812971 |
caaaataaataaataaaagaatttata--tgtaactggtgaacatgcttagttgaccttatgaagatctagtagggccatgttaacttggtcttctaatt |
24813068 |
T |
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| Q |
276 |
catgaataaatcattctcagaatctatttta--tttatttttctaaaacaaatttgaacacataaagatacaagaaaatttaaattaaatgaaaaaagt |
372 |
Q |
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| T |
24813069 |
catgaataaatcattctcagaatctattttaattttttttttctaaaacaaatttgaacacataaagatacaagaaaatttaaattaaatgaaaaaagt |
24813167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 24812783 - 24812942
Alignment:
| Q |
16 |
atcacaatgatcataaccaaccatgtttctgaaatatttgctttcattttctgtttaaaatcaaattgagaagnnnnnnnnngagagattattacacctc |
115 |
Q |
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| T |
24812783 |
atcacaatgatcataactaaccatgtttctgaaatattttctctcattttctgtttgaaataaaattgagaaaaaaaaaag---gaactaattacacctc |
24812879 |
T |
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| Q |
116 |
tctaccttgcagagaaattaaatatttatagtgtgctacacaacatggcaatcactttttcaa |
178 |
Q |
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| T |
24812880 |
tctaccttgcagagaaattaaatatttatagtgtgatacacaacatggcaatcactttttcaa |
24812942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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