View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0697_low_18 (Length: 370)

Name: NF0697_low_18
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0697_low_18
NF0697_low_18
[»] chr8 (2 HSPs)
chr8 (139-322)||(32019705-32019889)
chr8 (152-196)||(40642366-40642410)
[»] chr2 (3 HSPs)
chr2 (137-204)||(26179552-26179619)
chr2 (137-184)||(2757820-2757867)
chr2 (84-140)||(2758483-2758539)
[»] chr3 (1 HSPs)
chr3 (137-316)||(47955909-47956095)
[»] chr7 (3 HSPs)
chr7 (137-204)||(38095440-38095507)
chr7 (137-196)||(26788987-26789046)
chr7 (94-142)||(40261512-40261560)
[»] chr1 (2 HSPs)
chr1 (84-142)||(38002940-38002998)
chr1 (84-142)||(38003607-38003665)


Alignment Details
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 139 - 322
Target Start/End: Complemental strand, 32019889 - 32019705
Alignment:
Q  139 tttattcaaatatacaaacacctcccctatcatgtaacactgttagttctctgttaactaag-cttctctgccggaaaaacggctccccctaccattca- 236  Q
    ||||||||||| ||||||| |||||||||| || |||||| ||||||||||||||||||||| | |||||| || ||||||  | |||||||| |||||     
T  32019889 tttattcaaatctacaaacgcctcccctattatataacaccgttagttctctgttaactaagccctctctgtcgaaaaaactac-ccccctacaattcat 32019791  T
Q  237 ctttgcttttcatacaacgaccaagtaatgatagctgcagtgccacaccaggctgttcaatgaacttctttatactcacacatgct 322  Q
    ||||||||||||||||| | || || |||||||||   ||||||||| || ||||||||| |||||||||| ||||||||||||||    
T  32019790 ctttgcttttcatacaatggccgagcaatgatagcaaaagtgccacagcaagctgttcaacgaacttctttgtactcacacatgct 32019705  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 40642410 - 40642366
Alignment:
Q  152 acaaacacctcccctatcatgtaacactgttagttctctgttaac 196  Q
    ||||||||||||||||||||||||||||||| || ||||| ||||    
T  40642410 acaaacacctcccctatcatgtaacactgttggtgctctggtaac 40642366  T

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Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 26179619 - 26179552
Alignment:
Q  137 tttttattcaaatatacaaacacctcccctatcatgtaacactgttagttctctgttaactaagcttc 204  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26179619 tttttattcaaatctacaaacaccacccctatcatgtaacactgttagttctctgttaactaagcttc 26179552  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 184
Target Start/End: Original strand, 2757820 - 2757867
Alignment:
Q  137 tttttattcaaatatacaaacacctcccctatcatgtaacactgttag 184  Q
    |||||||| |||| ||||| |||||||||||||||||||||| |||||    
T  2757820 tttttatttaaatttacaagcacctcccctatcatgtaacaccgttag 2757867  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 2758539 - 2758483
Alignment:
Q  84 attatactcgcctcccttaaggtattcttaaatagcactgacattccctctagtttt 140  Q
    |||| |||| ||||||||||||| |||||||||| |||| |||| ||||||| ||||    
T  2758539 attacactcacctcccttaaggtcttcttaaataacactaacatcccctctaatttt 2758483  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 137 - 316
Target Start/End: Complemental strand, 47956095 - 47955909
Alignment:
Q  137 tttttattcaaatatacaaacacctcccctatcatgtaacactgttagttctctgttaactaagcttctctgccggaaaaacggctccccctaccattca 236  Q
    |||||| |||||| |||||||||| ||||| ||||||||||| ||| |||||||||||||| ||||||  || || ||||||  ||||||||||||||||    
T  47956095 tttttaatcaaatctacaaacaccacccctgtcatgtaacaccgttggttctctgttaacttagcttccttgtcgaaaaaactactccccctaccattca 47955996  T
Q  237 -ctttgc-------ttttcatacaacgaccaagtaatgatagctgcagtgccacaccaggctgttcaatgaacttctttatactcaca 316  Q
     || |||       ||| ||||||||| ||||  ||| || ||  | ||||||||||||||||||||| |||||||||||||||||||    
T  47955995 tctatgctttacaatttgcatacaacg-ccaaacaataatggccacggtgccacaccaggctgttcaacgaacttctttatactcaca 47955909  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 38095507 - 38095440
Alignment:
Q  137 tttttattcaaatatacaaacacctcccctatcatgtaacactgttagttctctgttaactaagcttc 204  Q
    |||||||||| || |||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  38095507 tttttattcatatctacaaacaccacccctatcatgtaacaccgttagttctctgttaactaagcttc 38095440  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 196
Target Start/End: Complemental strand, 26789046 - 26788987
Alignment:
Q  137 tttttattcaaatatacaaacacctcccctatcatgtaacactgttagttctctgttaac 196  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||    
T  26789046 tttttattcaaatctacaaacaccacccctatcatgtaacactgttagttctgtgttaac 26788987  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 40261560 - 40261512
Alignment:
Q  94 cctcccttaaggtattcttaaatagcactgacattccctctagttttta 142  Q
    |||||||||||||||||||| ||  |||| |||| ||||||||||||||    
T  40261560 cctcccttaaggtattcttatatgacactaacatcccctctagttttta 40261512  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 38002940 - 38002998
Alignment:
Q  84 attatactcgcctcccttaaggtattcttaaatagcactgacattccctctagttttta 142  Q
    |||| |||| |||||||| |||| ||||||||||||||| |||| ||||||||||||||    
T  38002940 attacactcacctccctttaggttttcttaaatagcactaacatcccctctagttttta 38002998  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 38003665 - 38003607
Alignment:
Q  84 attatactcgcctcccttaaggtattcttaaatagcactgacattccctctagttttta 142  Q
    |||| |||| ||||||||||||| ||||||||||||||| |||  ||||||| ||||||    
T  38003665 attacactcacctcccttaaggtcttcttaaatagcactaacaacccctctacttttta 38003607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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