View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_low_19 (Length: 329)
Name: NF0697_low_19
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 32012795 - 32012478
Alignment:
| Q |
1 |
tctacatataccaattagcacacaagaaataaaaatcacatttaaaataacattttaaacagttacctaaattacaatttcattgtcatacctaaagcaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
32012795 |
tctacatataccaattagcacacaggaaataaaaatcacatttaaaataacattttaaacagttacctaaattacaatttcaatgtcatacctgaagcaa |
32012696 |
T |
|
| Q |
101 |
tgtcttgtatccagctaagttatttatctcaaaacgacattcattgttaagctccaggtacaagtgagcaagatcaacctct-ctcatgcataattgctg |
199 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
32012695 |
tgtcttgtatccagctaagttatttatctcaaaatgacattcattgttaagctctaggtacaagtgagcaagatcaacctctccccatgcataattgctg |
32012596 |
T |
|
| Q |
200 |
accagttcaaggtcacatacgtatttcaggtatgccatatcaacataggtggcgctcttgttagtgaagagtgtgatgtcaaccaagtaaagtagatatg |
299 |
Q |
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|| |||||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32012595 |
actagttcaaggtcacagacgtatttcaggtatgccacatcaacataggtggcactattgttagtgaagagtgtgatgtcaaccaagtaaagcagatatg |
32012496 |
T |
|
| Q |
300 |
tctgaacaaccaggtctc |
317 |
Q |
| |
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|||||||||||||||||| |
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| T |
32012495 |
tctgaacaaccaggtctc |
32012478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 275
Target Start/End: Complemental strand, 29957624 - 29957485
Alignment:
| Q |
137 |
acattcattgttaagctccaggtacaagtgagcaagatcaacctctc-tcatgcataattgctgaccagttcaaggtcacatacgtatttcaggtatgcc |
235 |
Q |
| |
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| T |
29957624 |
acatccatttttaagctccttgtacaagtgagctaggataaccgctcctcatgcataatggttgaccaacttaaggtcacataagtacttgaggtatatc |
29957525 |
T |
|
| Q |
236 |
atatcaacataggtggcgctcttgttagtgaagagtgtga |
275 |
Q |
| |
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| ||||||| ||||||| ||||||| | | |||||||||| |
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| T |
29957524 |
acatcaacaaaggtggcactcttgtcaataaagagtgtga |
29957485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 45054118 - 45054168
Alignment:
| Q |
238 |
atcaacataggtggcgctcttgttagtgaagagtgtgatgtcaaccaagta |
288 |
Q |
| |
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||||||||||||||||||||||| ||| ||||| |||||| | |||||||| |
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| T |
45054118 |
atcaacataggtggcgctcttgtcagtaaagagagtgatgcccaccaagta |
45054168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 5412421 - 5412356
Alignment:
| Q |
107 |
gtatccagctaagttatttatctcaaaacgacattcattgttaagctccaggtacaagtgagcaag |
172 |
Q |
| |
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||||||||||||||| || ||| | |||||||| |||||||||||||| |||||||||||||| |
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|
| T |
5412421 |
gtatccagctaagttcttcgtctgataacgacatccattgttaagctccttatacaagtgagcaag |
5412356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 287
Target Start/End: Complemental strand, 26184378 - 26184330
Alignment:
| Q |
239 |
tcaacataggtggcgctcttgttagtgaagagtgtgatgtcaaccaagt |
287 |
Q |
| |
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|||||| |||||| ||||||||||| |||||| |||||||| ||||||| |
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|
| T |
26184378 |
tcaacaaaggtggtgctcttgttagagaagagagtgatgtccaccaagt |
26184330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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