View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_low_2 (Length: 919)
Name: NF0697_low_2
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 30 - 572
Target Start/End: Original strand, 29462216 - 29462758
Alignment:
| Q |
30 |
cttcatactgcaaatcaaccattgaaagttgaatttgatccnnnnnnnn-----ccgtaagcgacatacttgtagacgaattttatgttttttcttagtt |
124 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||| ||||||||||||||||||||||||| | |
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| T |
29462216 |
cttcatactgcaaatcaaccattgaaagttgaatttgatccttttttttttcttccataagagacatacttggagacgaattttatgttttttcttagct |
29462315 |
T |
|
| Q |
125 |
gattcgactttctttaatcgtgttacgtcatcaaatatattcgacatataacatctaacatgcacataatagtgaaagaatattgaaatacttggagtac |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
29462316 |
gattcgactttctttaatcgtgttacgtcatcaaatatattcgacatataacatctaacatgtacataatagtgaaagaagattgaaatacttggagtac |
29462415 |
T |
|
| Q |
225 |
ctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgattgagggaattgttaatatcatcattggttaacaatattgtagct |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29462416 |
ctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactactacgattgagggaattgttaatatcatcattggttaacaatattgtagct |
29462515 |
T |
|
| Q |
325 |
tcgattatagacacataggtaagaattacaacaatcccagaaagaagaagaatatttcgtgccatgactatagtttgtatatttgcttcatttcaaccaa |
424 |
Q |
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|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
29462516 |
tcaattatagccacataggtaagaattacaacaatcccagaaagaagaagaatatttcgtgccatgact----tttgtatatttgcttcatttcaaccaa |
29462611 |
T |
|
| Q |
425 |
ggttgcgtagcttgggcccttataaataatatagtggaacttaattatgtgtgctgttaaactcaaatagttaaagaataattaagatcactctcaagan |
524 |
Q |
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| T |
29462612 |
ggttgcgtagcttgggcccttataaataatatagtggaacttaattatttgtgctgttaaactcaaatagttaaagaataattaagatcactctcaaga- |
29462710 |
T |
|
| Q |
525 |
nnnnnnnnnaattaagatcaataattggccgaaggcagagattatata |
572 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
29462711 |
tttttttttaattaagatcaataattggccgaaggcagagattatata |
29462758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 567 - 706
Target Start/End: Original strand, 29462783 - 29462921
Alignment:
| Q |
567 |
tatatatcatgtgactgggcccttacattacgattttatatattcccactcatttttgtcaaaaaaggtattgaacttaaatgaacaaaataatattata |
666 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29462783 |
tatatatcatgtgactgggcc-ttacaatacgattttatatattcccactcatttttgtcaaaaaaggtattgaacttaaacgaacaaaataatattata |
29462881 |
T |
|
| Q |
667 |
ccaacatttcttaccaaaatgaacaaaatatatcacgaca |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
29462882 |
ccaacatttcttaccaaaatgaacaaaatatatcacgaca |
29462921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 220 - 448
Target Start/End: Complemental strand, 29420912 - 29420686
Alignment:
| Q |
220 |
agtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgattgagggaattgttaatatcatcattggttaacaatattg |
319 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29420912 |
agtacctggtaagctgatgaagctgttccaaaaataaaaccttctgggaaactactacgattgagggaattgttaatatcatcattggttaacaatattg |
29420813 |
T |
|
| Q |
320 |
tagcttcgattatagacacataggtaagaattacaacaatcccagaaagaagaagaatatttcgtgccatgactatagtttgtatatttgcttcatttca |
419 |
Q |
| |
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||||||| ||||||| |||| | ||||||| ||||| || | | |||||||||| |||| | ||||||||||||||| |||||||| ||| ||||| |
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| T |
29420812 |
tagcttcaattatagccacacaactaagaatcacaacgattcttgggagaagaagaagatttaataccatgactatagtttatatatttg-ttcctttca |
29420714 |
T |
|
| Q |
420 |
accaaggttgcgtagcttgggcccttata |
448 |
Q |
| |
|
|||| ||| |||||||||||| ||||| |
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| T |
29420713 |
gccaa-attgtgtagcttgggccattata |
29420686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 815 - 919
Target Start/End: Original strand, 29463373 - 29463476
Alignment:
| Q |
815 |
aaacggctcatataatgatactcaatgtgttggtcgcttaggaatcatttgaaaaggtgttccattatgcatcagtttacccttcaaggaaagtaggata |
914 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29463373 |
aaacagctcatataat-atactcaatgtgttggtcgcttaggaatcatttgaaaaggtgttccattatgcatcagtttacccttcaagtaaagtaggata |
29463471 |
T |
|
| Q |
915 |
cctat |
919 |
Q |
| |
|
||||| |
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|
| T |
29463472 |
cctat |
29463476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 704 - 781
Target Start/End: Original strand, 29462955 - 29463031
Alignment:
| Q |
704 |
acatttggcttcttaaaaaagaataactttctctccggttagtcctttcatcaaaggatgaactaagtttttaagagt |
781 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29462955 |
acatttggcttcttaaaaaagaataa-tttctctccggttagtcctttcatcaaaggatgaactaagtttttaagagt |
29463031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 344 - 448
Target Start/End: Complemental strand, 29608038 - 29607935
Alignment:
| Q |
344 |
taagaattacaacaatcccagaaagaagaagaatatttcgtgccatgactatagtttgtatatttgcttcatttcaaccaaggttgcgtagcttgggccc |
443 |
Q |
| |
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||||||| ||||||| || |||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
29608038 |
taagaatcacaacaactcctgaaagaagaagaatatttaatgccatgactatagttcgtatatttgcttca-ttcaaccaaagttgcgtagcttgggccc |
29607940 |
T |
|
| Q |
444 |
ttata |
448 |
Q |
| |
|
||||| |
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|
| T |
29607939 |
ttata |
29607935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 193 - 275
Target Start/End: Complemental strand, 29608135 - 29608053
Alignment:
| Q |
193 |
atagtgaaagaatattgaaatacttggagtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactact |
275 |
Q |
| |
|
||||| |||||||||| ||||| |||||||||||||||||||||||| ||| ||||| |||| |||| |||| |||||||||| |
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|
| T |
29608135 |
atagtaaaagaatattaaaatatttggagtacctggtaagctgatgaagcttttccagaaattaaacattctaggaaactact |
29608053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 29404618 - 29404531
Alignment:
| Q |
199 |
aaagaatattgaaatacttggagtacctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgattgaggg |
286 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||| || |||||||||||||| ||||| ||||| |||||||| || ||||||| |
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|
| T |
29404618 |
aaagattattgaaaattttggactacctggtaagctgaagaagctgttccaaaaatgaaaccatctggaaaactactccggttgaggg |
29404531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 223 - 281
Target Start/End: Complemental strand, 8089037 - 8088979
Alignment:
| Q |
223 |
acctggtaagctgatgatgctgttccaaaaataaaaccttctgggaaactacttcgatt |
281 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| ||||||||||||| ||| |||| |
|
|
| T |
8089037 |
acctggtaagctgaagatgctgttccaaaaacaaaatcttctgggaaactgctttgatt |
8088979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 729 - 774
Target Start/End: Original strand, 32011650 - 32011695
Alignment:
| Q |
729 |
actttctctccggttagtcctttcatcaaaggatgaactaagtttt |
774 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| | ||||||||| |
|
|
| T |
32011650 |
actttctctctgtttagtcctttcatcaaaggatcagctaagtttt |
32011695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 729 - 774
Target Start/End: Complemental strand, 37408559 - 37408514
Alignment:
| Q |
729 |
actttctctccggttagtcctttcatcaaaggatgaactaagtttt |
774 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||| ||||||||||| |
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| T |
37408559 |
actttctctctgtttagtcctttcgtcaaaggatcaactaagtttt |
37408514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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