View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_low_20 (Length: 324)
Name: NF0697_low_20
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 31 - 309
Target Start/End: Complemental strand, 30604301 - 30604024
Alignment:
| Q |
31 |
gaatgtcattccatttaggtaaaatataaaggaaaagagaaataggtggataactt-ttgaagtggcaagtttctccatcttcttcatcttagagtaaac |
129 |
Q |
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| T |
30604301 |
gaatgtcattccatttaggtaaaatataaaggaaaagagaaataggtggataaattcttgaaatggcaagtttctccatcttcttcatcttagagtaaac |
30604202 |
T |
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| Q |
130 |
cattggaaatcatttcacagagaagtttctctgccttttcatcttcattgttattaaaaagtgagtggatggttgtttcatatgtaactgcatccaggtt |
229 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
30604201 |
cattggaaatcatttcacata--agtttctctgccttttcatcttcattgttattaaaaagtgagtggatggttgttttatatgtaactgcatccgggtt |
30604104 |
T |
|
| Q |
230 |
gcaaccattctctttcatttttgaaatcaatttcaaagcatcattggtcaagtttctcaagcaaaatccattgatcatag |
309 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||| |||| ||||||||||| |||||||||||||||| |
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| T |
30604103 |
gcaaccattctctttcatttttggaaacaatttcaaagcatcattgatcaattttctcaagcagaatccattgatcatag |
30604024 |
T |
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