View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0697_low_22 (Length: 285)

Name: NF0697_low_22
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0697_low_22
NF0697_low_22
[»] chr7 (14 HSPs)
chr7 (124-232)||(38099163-38099271)
chr7 (140-210)||(48716585-48716655)
chr7 (141-213)||(38098555-38098627)
chr7 (2-41)||(38099232-38099271)
chr7 (130-187)||(25758634-25758693)
chr7 (124-172)||(47171392-47171440)
chr7 (6-41)||(47171405-47171440)
chr7 (3-41)||(9269934-9269972)
chr7 (124-162)||(9269934-9269972)
chr7 (12-41)||(40496407-40496436)
chr7 (124-153)||(40496407-40496436)
chr7 (13-41)||(10234010-10234038)
chr7 (124-152)||(10234010-10234038)
chr7 (144-184)||(40273598-40273638)
[»] chr3 (9 HSPs)
chr3 (127-186)||(46889498-46889557)
chr3 (124-161)||(33291840-33291877)
chr3 (4-41)||(33291840-33291877)
chr3 (124-184)||(52696051-52696112)
chr3 (127-184)||(19227483-19227540)
chr3 (1-38)||(46889498-46889535)
chr3 (144-184)||(13477752-13477792)
chr3 (144-184)||(45393078-45393118)
chr3 (2-41)||(52696072-52696112)
[»] chr2 (16 HSPs)
chr2 (124-189)||(42651266-42651331)
chr2 (124-172)||(12001098-12001146)
chr2 (2-41)||(12001098-12001137)
chr2 (2-41)||(42651292-42651331)
chr2 (129-184)||(44791511-44791566)
chr2 (124-186)||(19405346-19405408)
chr2 (124-189)||(19424154-19424219)
chr2 (129-190)||(35166045-35166106)
chr2 (125-189)||(41564825-41564889)
chr2 (129-186)||(42650595-42650652)
chr2 (124-172)||(3666877-3666925)
chr2 (6-41)||(3666877-3666912)
chr2 (148-199)||(38247808-38247859)
chr2 (2-41)||(38248927-38248966)
chr2 (124-163)||(38248927-38248966)
chr2 (2-40)||(41564825-41564863)
[»] chr1 (17 HSPs)
chr1 (141-214)||(31571763-31571836)
chr1 (124-176)||(1478537-1478589)
chr1 (124-159)||(1159091-1159126)
chr1 (6-41)||(1159091-1159126)
chr1 (6-41)||(1478554-1478589)
chr1 (127-176)||(35596958-35597007)
chr1 (153-186)||(35996827-35996860)
chr1 (124-172)||(1477973-1478021)
chr1 (6-38)||(35596958-35596990)
chr1 (6-41)||(1477973-1478008)
chr1 (132-186)||(38163065-38163119)
chr1 (126-162)||(23733421-23733457)
chr1 (3-39)||(23733421-23733457)
chr1 (138-182)||(25447046-25447090)
chr1 (5-41)||(34082899-34082935)
chr1 (124-160)||(34082899-34082935)
chr1 (124-172)||(35597524-35597572)
[»] chr4 (11 HSPs)
chr4 (137-176)||(36488133-36488172)
chr4 (124-159)||(52408294-52408329)
chr4 (6-41)||(52408294-52408329)
chr4 (6-41)||(52413629-52413664)
chr4 (124-159)||(52413629-52413664)
chr4 (129-182)||(13922538-13922591)
chr4 (5-38)||(49442895-49442928)
chr4 (127-160)||(49442895-49442928)
chr4 (124-176)||(51707493-51707545)
chr4 (3-39)||(51708189-51708225)
chr4 (126-162)||(51708189-51708225)
[»] chr8 (5 HSPs)
chr8 (127-176)||(3029243-3029292)
chr8 (6-38)||(3029260-3029292)
chr8 (6-38)||(13950178-13950210)
chr8 (127-159)||(13950178-13950210)
chr8 (124-184)||(44621625-44621685)
[»] scaffold0434 (2 HSPs)
scaffold0434 (126-162)||(12892-12928)
scaffold0434 (3-39)||(12892-12928)
[»] chr5 (3 HSPs)
chr5 (126-186)||(32716207-32716267)
chr5 (124-163)||(16133582-16133621)
chr5 (2-41)||(16133582-16133621)
[»] scaffold1862 (2 HSPs)
scaffold1862 (6-41)||(39-74)
scaffold1862 (124-159)||(39-74)
[»] chr6 (5 HSPs)
chr6 (127-186)||(10092418-10092477)
chr6 (6-41)||(13252833-13252868)
chr6 (124-159)||(13252833-13252868)
chr6 (124-182)||(15882168-15882226)
chr6 (2-38)||(10092441-10092477)


Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 124 - 232
Target Start/End: Complemental strand, 38099271 - 38099163
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggttcacaatttaatttaagaaacaaatcaatagcactgcgca 223  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  38099271 aggtgtaagtcaaaagacttgcaccaaatctcaaccattatatctaattaatctaatggttcacaatttaatttaagaaacaaattaatagaactgcgca 38099172  T
Q  224 cacgattat 232  Q
    |||||||||    
T  38099171 cacgattat 38099163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 48716585 - 48716655
Alignment:
Q  140 acttacaccaaatctcaaccattagatctaattaatctaatggttcacaatttaatttaagaaacaaatca 210  Q
    ||||||| |||||||||||||||| ||||||| |||| ||||| ||| |||||| ||||| ||||||||||    
T  48716585 acttacatcaaatctcaaccattaaatctaatcaatcgaatggctcataatttattttaaaaaacaaatca 48716655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 38098555 - 38098627
Alignment:
Q  141 cttacaccaaatctcaaccattagatctaattaatctaatggttcacaatttaatttaagaaacaaatcaata 213  Q
    |||| ||||||| ||||||||||||| |||| |||| ||||| |||||| ||| ||||| |||||||||||||    
T  38098555 cttaaaccaaatatcaaccattagatttaatcaatcgaatggctcacaacttattttaaaaaacaaatcaata 38098627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 38099232 - 38099271
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  38099232 taatggttgagatttggtgcaagtcttttgacttacacct 38099271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 25758634 - 25758693
Alignment:
Q  130 aagtcaaaagacttacac--caaatctcaaccattagatctaattaatctaatggttcac 187  Q
    |||| |||||||||||||  |||||||||||||||| ||| |||||||| ||||||||||    
T  25758634 aagttaaaagacttacacaccaaatctcaaccattaaatcaaattaatccaatggttcac 25758693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 47171440 - 47171392
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaatt 172  Q
    ||||||||||||||||||||||||||||||| |||| ||| || |||||    
T  47171440 aggtgtaagtcaaaagacttacaccaaatcttaaccgttaaatttaatt 47171392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 47171405 - 47171440
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||| |||||||||||||||||||||||||||||||    
T  47171405 ggttaagatttggtgtaagtcttttgacttacacct 47171440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 9269934 - 9269972
Alignment:
Q  3 aatggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  9269934 aatggttgatatttgttgtaagtcttttgacttacacct 9269972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 9269972 - 9269934
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccatt 162  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  9269972 aggtgtaagtcaaaagacttacaacaaatatcaaccatt 9269934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 40496407 - 40496436
Alignment:
Q  12 gatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||||||||    
T  40496407 gatttggtgtaagtcttttgacttacacct 40496436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 40496436 - 40496407
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatc 153  Q
    ||||||||||||||||||||||||||||||    
T  40496436 aggtgtaagtcaaaagacttacaccaaatc 40496407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 10234010 - 10234038
Alignment:
Q  13 atttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||||||||||    
T  10234010 atttggtgtaagtcttttgacttacacct 10234038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 152
Target Start/End: Complemental strand, 10234038 - 10234010
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaat 152  Q
    |||||||||||||||||||||||||||||    
T  10234038 aggtgtaagtcaaaagacttacaccaaat 10234010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 40273598 - 40273638
Alignment:
Q  144 acaccaaatctcaaccattagatctaattaatctaatggtt 184  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  40273598 acaccaaatctcaaccgttcaatctaattaatctaatggtt 40273638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 127 - 186
Target Start/End: Original strand, 46889498 - 46889557
Alignment:
Q  127 tgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggttca 186  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46889498 tgtaagtcgaaagacttacacaaaatctcaaccattagatctaattaatctaatggttca 46889557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 33291840 - 33291877
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccat 161  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  33291840 aggtgtaagtcaaaaaacttacaccaaatctcaaccat 33291877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 33291877 - 33291840
Alignment:
Q  4 atggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||| |||||||||||||||    
T  33291877 atggttgagatttggtgtaagttttttgacttacacct 33291840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 52696112 - 52696051
Alignment:
Q  124 aggtgtaagtcaaaaga-cttacaccaaatctcaaccattagatctaattaatctaatggtt 184  Q
    ||||||||||||||| | ||||||||||||||||||||||| ||  |||||||| |||||||    
T  52696112 aggtgtaagtcaaaaaaacttacaccaaatctcaaccattaaattcaattaatccaatggtt 52696051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 19227483 - 19227540
Alignment:
Q  127 tgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggtt 184  Q
    ||||||||||||||||||||||||||| || ||||   ||||||  ||||||||||||    
T  19227483 tgtaagtcaaaagacttacaccaaatcccagccatccaatctaaacaatctaatggtt 19227540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46889535 - 46889498
Alignment:
Q  1 ctaatggttgagatttggtgtaagtcttttgacttaca 38  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  46889535 ctaatggttgagattttgtgtaagtctttcgacttaca 46889498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 13477792 - 13477752
Alignment:
Q  144 acaccaaatctcaaccattagatctaattaatctaatggtt 184  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  13477792 acaccaaatctcaaccgttcaatctaattaatctaatggtt 13477752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 45393078 - 45393118
Alignment:
Q  144 acaccaaatctcaaccattagatctaattaatctaatggtt 184  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  45393078 acaccaaatctcaaccgttcaatctaattaatctaatggtt 45393118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 52696072 - 52696112
Alignment:
Q  2 taatggttgagatttggtgtaag-tcttttgacttacacct 41  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  52696072 taatggttgagatttggtgtaagtttttttgacttacacct 52696112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 42651331 - 42651266
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggttcacaa 189  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||  ||||| ||||||    
T  42651331 aggtgtaagtcaaaagacttacaccaaatctcaaccattaaatcaaattaattcaatggctcacaa 42651266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 12001098 - 12001146
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaatt 172  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  12001098 aggtgtaagtcaaaagacttacaccaaatctcaaccattaaatcaaatt 12001146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 12001137 - 12001098
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12001137 taatggttgagatttggtgtaagtcttttgacttacacct 12001098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 42651292 - 42651331
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  42651292 taatggttgagatttggtgtaagtcttttgacttacacct 42651331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 44791566 - 44791511
Alignment:
Q  129 taagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggtt 184  Q
    ||||||| ||||||||||| ||||||||||||||| |||||||||||| |||||||    
T  44791566 taagtcagaagacttacacaaaatctcaaccattaaatctaattaatccaatggtt 44791511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 19405346 - 19405408
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggttca 186  Q
    |||||||||| |||||||||||||||||| | |||||||| ||| |||||||| |||||||||    
T  19405346 aggtgtaagttaaaagacttacaccaaattttaaccattaaatcaaattaatccaatggttca 19405408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 189
Target Start/End: Complemental strand, 19424219 - 19424154
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggttcacaa 189  Q
    ||||||||| |||||| ||| |||||||| |||||||||| ||| |||||||| ||||||||||||    
T  19424219 aggtgtaagccaaaaggctttcaccaaatttcaaccattaaatcaaattaatcaaatggttcacaa 19424154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 35166045 - 35166106
Alignment:
Q  129 taagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggttcacaat 190  Q
    ||||||| ||||||||||| ||||||||||||||| || ||||||||| ||||||| |||||    
T  35166045 taagtcagaagacttacacaaaatctcaaccattaaatttaattaatccaatggtttacaat 35166106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 41564825 - 41564889
Alignment:
Q  125 ggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggttcacaa 189  Q
    ||||||||| |||||||||||||||||||| |||||||| ||| ||| |||  ||||||||||||    
T  41564825 ggtgtaagttaaaagacttacaccaaatcttaaccattaaatcaaatcaattcaatggttcacaa 41564889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 42650595 - 42650652
Alignment:
Q  129 taagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggttca 186  Q
    |||||||||||||||| | ||||||| |||||||| ||| |||||||| |||||||||    
T  42650595 taagtcaaaagacttatatcaaatcttaaccattaaatcaaattaatcaaatggttca 42650652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 3666877 - 3666925
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaatt 172  Q
    ||||||||||||||||||||||||||||||| |||| ||| || |||||    
T  3666877 aggtgtaagtcaaaagacttacaccaaatcttaaccgttaaatttaatt 3666925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 3666912 - 3666877
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||| |||||||||||||||||||||||||||||||    
T  3666912 ggttaagatttggtgtaagtcttttgacttacacct 3666877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 38247808 - 38247859
Alignment:
Q  148 caaatctcaaccattagatctaattaatctaatggttcacaatttaatttaa 199  Q
    |||||||||||||||||||||||| |||| ||||  ||| ||||||||||||    
T  38247808 caaatctcaaccattagatctaatcaatcgaatgactcataatttaatttaa 38247859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 38248927 - 38248966
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  38248927 taatggttgagatttggtgtaagtcattagacttacacct 38248966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 163
Target Start/End: Complemental strand, 38248966 - 38248927
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccatta 163  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  38248966 aggtgtaagtctaatgacttacaccaaatctcaaccatta 38248927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 41564863 - 41564825
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttacacc 40  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  41564863 taatggttaagatttggtgtaagtcttttaacttacacc 41564825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 31571836 - 31571763
Alignment:
Q  141 cttacaccaaatctcaaccattagatctaattaatctaatggttcacaatttaatttaagaaacaaatcaatag 214  Q
    |||||||||||| |||||||||||||| ||| ||| |||||| |||||||||||||| | ||||||| ||||||    
T  31571836 cttacaccaaatttcaaccattagatccaatcaatataatggctcacaatttaatttcaaaaacaaaccaatag 31571763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 176
Target Start/End: Complemental strand, 1478589 - 1478537
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatc 176  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||||| ||||    
T  1478589 aggtgtaagtcaaaagacttacaccaaatctcaaccgttaaaactaataaatc 1478537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 1159091 - 1159126
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaacc 159  Q
    ||||||||||||||||||||||||||||||||||||    
T  1159091 aggtgtaagtcaaaagacttacaccaaatctcaacc 1159126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 1159126 - 1159091
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||||||||||||||    
T  1159126 ggttgagatttggtgtaagtcttttgacttacacct 1159091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 1478554 - 1478589
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||||||||||||||    
T  1478554 ggttgagatttggtgtaagtcttttgacttacacct 1478589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 35596958 - 35597007
Alignment:
Q  127 tgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatc 176  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||| ||||    
T  35596958 tgtaagtcaaaagacttacaccaaatctcaaccgttaaaactaataaatc 35597007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 186
Target Start/End: Complemental strand, 35996860 - 35996827
Alignment:
Q  153 ctcaaccattagatctaattaatctaatggttca 186  Q
    ||||||||||||||||||||||||||||||||||    
T  35996860 ctcaaccattagatctaattaatctaatggttca 35996827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 1477973 - 1478021
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaatt 172  Q
    ||||||||||||||||||||||||||||||| |||| ||| || |||||    
T  1477973 aggtgtaagtcaaaagacttacaccaaatcttaaccgttaaatttaatt 1478021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Complemental strand, 35596990 - 35596958
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttaca 38  Q
    |||||||||||||||||||||||||||||||||    
T  35596990 ggttgagatttggtgtaagtcttttgacttaca 35596958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 1478008 - 1477973
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||| |||||||||||||||||||||||||||||||    
T  1478008 ggttaagatttggtgtaagtcttttgacttacacct 1477973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 38163119 - 38163065
Alignment:
Q  132 gtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggttca 186  Q
    ||||||||||| ||||||||| | |||||||| || ||||||||| |||||||||    
T  38163119 gtcaaaagactgacaccaaattttaaccattaaatttaattaatcaaatggttca 38163065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 23733421 - 23733457
Alignment:
Q  126 gtgtaagtcaaaagacttacaccaaatctcaaccatt 162  Q
    ||||||||||||||| ||||||||||||||| |||||    
T  23733421 gtgtaagtcaaaagatttacaccaaatctcatccatt 23733457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 23733457 - 23733421
Alignment:
Q  3 aatggttgagatttggtgtaagtcttttgacttacac 39  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  23733457 aatggatgagatttggtgtaaatcttttgacttacac 23733421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 182
Target Start/End: Complemental strand, 25447090 - 25447046
Alignment:
Q  138 agacttacaccaaatctcaaccattagatctaattaatctaatgg 182  Q
    ||||||||||||||||||||||| || ||  ||||||||||||||    
T  25447090 agacttacaccaaatctcaaccactaaattaaattaatctaatgg 25447046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 34082899 - 34082935
Alignment:
Q  5 tggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||||  ||||||||||||    
T  34082899 tggttgagatttggtgtaagtctaatgacttacacct 34082935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 34082935 - 34082899
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaacca 160  Q
    ||||||||||||  |||||||||||||||||||||||    
T  34082935 aggtgtaagtcattagacttacaccaaatctcaacca 34082899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 35597572 - 35597524
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaatt 172  Q
    ||||||||||||||||| ||||||||||||| |||| ||| || |||||    
T  35597572 aggtgtaagtcaaaagatttacaccaaatcttaaccgttaaatttaatt 35597524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 176
Target Start/End: Complemental strand, 36488172 - 36488133
Alignment:
Q  137 aagacttacaccaaatctcaaccattagatctaattaatc 176  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  36488172 aagacttacaccaaatctcaaccattaaatctaattaatc 36488133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 52408294 - 52408329
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaacc 159  Q
    ||||||||||| ||||||||||||||||||||||||    
T  52408294 aggtgtaagtccaaagacttacaccaaatctcaacc 52408329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 52408329 - 52408294
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||||| |||||||||||    
T  52408329 ggttgagatttggtgtaagtctttggacttacacct 52408294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 52413629 - 52413664
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||||| |||||||||||    
T  52413629 ggttgagatttggtgtaagtctttggacttacacct 52413664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 52413664 - 52413629
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaacc 159  Q
    ||||||||||| ||||||||||||||||||||||||    
T  52413664 aggtgtaagtccaaagacttacaccaaatctcaacc 52413629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 13922591 - 13922538
Alignment:
Q  129 taagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatgg 182  Q
    |||||| || |||||||||||||||||||||||||  |  ||||||||||||||    
T  13922591 taagtctaatgacttacaccaaatctcaaccattaatttaaattaatctaatgg 13922538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 49442895 - 49442928
Alignment:
Q  5 tggttgagatttggtgtaagtcttttgacttaca 38  Q
    |||||||||||||||||||||| |||||||||||    
T  49442895 tggttgagatttggtgtaagtcatttgacttaca 49442928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 160
Target Start/End: Complemental strand, 49442928 - 49442895
Alignment:
Q  127 tgtaagtcaaaagacttacaccaaatctcaacca 160  Q
    ||||||||||| ||||||||||||||||||||||    
T  49442928 tgtaagtcaaatgacttacaccaaatctcaacca 49442895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 51707493 - 51707545
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatc 176  Q
    ||||||||||| ||||| ||||||||||||| |||| ||| ||||| ||||||    
T  51707493 aggtgtaagtctaaagatttacaccaaatctgaaccgttatatctatttaatc 51707545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 51708189 - 51708225
Alignment:
Q  3 aatggttgagatttggtgtaagtcttttgacttacac 39  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  51708189 aatggatgagatttgatgtaagtcttttgacttacac 51708225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 51708225 - 51708189
Alignment:
Q  126 gtgtaagtcaaaagacttacaccaaatctcaaccatt 162  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  51708225 gtgtaagtcaaaagacttacatcaaatctcatccatt 51708189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 176
Target Start/End: Complemental strand, 3029292 - 3029243
Alignment:
Q  127 tgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatc 176  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||| ||||    
T  3029292 tgtaagtcaaaagacttacaccaaatctcaaccgttaaaactaataaatc 3029243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 3029260 - 3029292
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttaca 38  Q
    |||||||||||||||||||||||||||||||||    
T  3029260 ggttgagatttggtgtaagtcttttgacttaca 3029292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 13950178 - 13950210
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttaca 38  Q
    |||||||||||||| ||||||||||||||||||    
T  13950178 ggttgagatttggtataagtcttttgacttaca 13950210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 159
Target Start/End: Complemental strand, 13950210 - 13950178
Alignment:
Q  127 tgtaagtcaaaagacttacaccaaatctcaacc 159  Q
    |||||||||||||||||| ||||||||||||||    
T  13950210 tgtaagtcaaaagacttataccaaatctcaacc 13950178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 44621625 - 44621685
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggtt 184  Q
    ||||||||||| |||| ||| |||||||||  |||||||  ||||| ||||||||||||||    
T  44621625 aggtgtaagtctaaaggcttgcaccaaatcctaaccattcaatctatttaatctaatggtt 44621685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 12892 - 12928
Alignment:
Q  126 gtgtaagtcaaaagacttacaccaaatctcaaccatt 162  Q
    |||||||| ||||||||||||||||||||||||||||    
T  12892 gtgtaagttaaaagacttacaccaaatctcaaccatt 12928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 12928 - 12892
Alignment:
Q  3 aatggttgagatttggtgtaagtcttttgacttacac 39  Q
    |||||||||||||||||||||||||||| ||||||||    
T  12928 aatggttgagatttggtgtaagtcttttaacttacac 12892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 32716207 - 32716267
Alignment:
Q  126 gtgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggttca 186  Q
    |||||||| |||| | |||||||||||||||| ||||| ||||||| |||| |||||||||    
T  32716207 gtgtaagttaaaacatttacaccaaatctcaaacattaaatctaatcaatccaatggttca 32716267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 16133582 - 16133621
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccatta 163  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  16133582 aggtgtaagtgtaaagacttacaccaaatctcaaccatta 16133621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 16133621 - 16133582
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttacacct 41  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  16133621 taatggttgagatttggtgtaagtctttacacttacacct 16133582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1862 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold1862
Description:

Target: scaffold1862; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 39 - 74
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||||| |||||||||||    
T  39 ggttgagatttggtgtaagtctttggacttacacct 74  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1862; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 74 - 39
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaacc 159  Q
    ||||||||||| ||||||||||||||||||||||||    
T  74 aggtgtaagtccaaagacttacaccaaatctcaacc 39  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 186
Target Start/End: Complemental strand, 10092477 - 10092418
Alignment:
Q  127 tgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatggttca 186  Q
    ||||||||| ||||||||||| ||||||||||||||| || || |||||| ||| |||||    
T  10092477 tgtaagtcataagacttacactaaatctcaaccattaaatttagttaatcgaatagttca 10092418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 13252833 - 13252868
Alignment:
Q  6 ggttgagatttggtgtaagtcttttgacttacacct 41  Q
    |||||||||||||||||||||||| |||||||||||    
T  13252833 ggttgagatttggtgtaagtctttggacttacacct 13252868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 13252868 - 13252833
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaacc 159  Q
    ||||||||||| ||||||||||||||||||||||||    
T  13252868 aggtgtaagtccaaagacttacaccaaatctcaacc 13252833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 15882168 - 15882226
Alignment:
Q  124 aggtgtaagtcaaaagacttacaccaaatctcaaccattagatctaattaatctaatgg 182  Q
    ||||||||||| || ||| |||||||||||||||||||||  |  ||||||||||||||    
T  15882168 aggtgtaagtctaatgacatacaccaaatctcaaccattaatttaaattaatctaatgg 15882226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 10092441 - 10092477
Alignment:
Q  2 taatggttgagatttggtgtaagtcttttgacttaca 38  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  10092441 taatggttgagatttagtgtaagtcttatgacttaca 10092477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1242 times since January 2019
Visitors: 4413