View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_low_24 (Length: 275)
Name: NF0697_low_24
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 33789464 - 33789728
Alignment:
| Q |
1 |
ctctttatatcaaaaccatcaaccttaacaacaccttcatttgcatcataaaatctttgtactaatgctattgctgttgatttaccacttccacttgcac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33789464 |
ctctttatatcaaaaccatcaaccttaacaacaccttcatttgcatcataaaatctttgtactaatgctattgctgttgattttccacttccacttgcac |
33789563 |
T |
|
| Q |
101 |
caactagtgcaacagtttttccagcttcaattttgagattaaaatcactaagtacaacactttcttgacgtgaaggatatgtgaatttcacatgttcaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33789564 |
caactagtgcaacagtttttccagcttcaattttgagattaaaatcacttagtacaacactttcttgacgtgaagggtatgtgaatttcacatgttcaaa |
33789663 |
T |
|
| Q |
201 |
atctaatttgccacttatggtttctaatataattccttttgttgtatcttcactatcaatctctg |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33789664 |
atctaatttgccacttatggtttctaatataattccttttgttgtatcttcactatcaatttctg |
33789728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 12412953 - 12412877
Alignment:
| Q |
145 |
tcactaagtacaacactttcttgacgtgaaggatatgtgaatttcacatgttcaaaatctaatttgccacttatggtttctaat |
228 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||||| |
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|
| T |
12412953 |
tcactaagtataacactttcttgacgtgaaggg-------atttgacatgttcaagatttaatttgccacttatggtttctaat |
12412877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 51159605 - 51159537
Alignment:
| Q |
45 |
atcataaaatctttgtactaatgctattgctgttgatttaccacttccacttgcaccaactagtgcaac |
113 |
Q |
| |
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||||||||||||||||| ||||| || |||||||||| |||||||||||| | ||||| |||||||| |
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| T |
51159605 |
atcataaaatctttgtagtaatgagatcactgttgattttccacttccactttctccaaccagtgcaac |
51159537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 113
Target Start/End: Complemental strand, 51202213 - 51202145
Alignment:
| Q |
45 |
atcataaaatctttgtactaatgctattgctgttgatttaccacttccacttgcaccaactagtgcaac |
113 |
Q |
| |
|
||||||||||||||||| |||| || |||||||||| |||||||||||| | ||||| |||||||| |
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|
| T |
51202213 |
atcataaaatctttgtatcaatgagatcactgttgattttccacttccactttctccaacaagtgcaac |
51202145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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