View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_low_25 (Length: 270)
Name: NF0697_low_25
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_25 |
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| [»] chr5 (6 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 11710062 - 11710186
Alignment:
| Q |
29 |
aaagctttcatcgatgctacatatattcaactgcaggaacttggtgaaggaaataacctgcaccttaattatgataatactaattagcaagaatgttgat |
128 |
Q |
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| T |
11710062 |
aaagctttcatcgatgctacatatattcaactgcaggaacttggtgaaggaaataacctgcaccttaattatgataatactaattagcaagaatgttgat |
11710161 |
T |
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| Q |
129 |
gatggaaaatcgtctagttactttt |
153 |
Q |
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| T |
11710162 |
gatggaaaattgtctcgttactttt |
11710186 |
T |
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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 37525889 - 37525951
Alignment:
| Q |
208 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgc |
270 |
Q |
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| T |
37525889 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgc |
37525951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 37588050 - 37588112
Alignment:
| Q |
208 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgc |
270 |
Q |
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| T |
37588050 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgc |
37588112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 37690326 - 37690388
Alignment:
| Q |
208 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgc |
270 |
Q |
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| T |
37690326 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgc |
37690388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 37618624 - 37618686
Alignment:
| Q |
208 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgc |
270 |
Q |
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| T |
37618624 |
caagcttcatggtgtaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgc |
37618686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 37794392 - 37794454
Alignment:
| Q |
208 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgc |
270 |
Q |
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| T |
37794392 |
caagcttcatggtgtaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgc |
37794454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 37787645 - 37787707
Alignment:
| Q |
208 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgc |
270 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||| |
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| T |
37787645 |
caagcttcatggtttaaatgctcaatgggctgaagagaagaagctaagttacatgaggcatgc |
37787707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 14548412 - 14548474
Alignment:
| Q |
208 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgc |
270 |
Q |
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| T |
14548412 |
caagcttcatggtttaaatgctcaatggagtgaagagaagaagcaaagttacataaggcatgc |
14548474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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