View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_low_26 (Length: 269)
Name: NF0697_low_26
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 41 - 239
Target Start/End: Original strand, 3127294 - 3127495
Alignment:
| Q |
41 |
aactccttatcaattaaattaatcaagacatgtaattcttattttaagaattaataacaattcttgttattgtaacagttaaatttaaattaagaaaatt |
140 |
Q |
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| T |
3127294 |
aactccttatcaattaaattattcaaggcatgtaattcttattttaagaattaataacaa-----gttattctaaccgttagatttaaattaagaaaatt |
3127388 |
T |
|
| Q |
141 |
tattttaacaattttttagttgaccaagtataccgtg--------tataaacaagtatatatatagtgtttaaaaatttctatttcttcaagtcacatag |
232 |
Q |
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| T |
3127389 |
tattttaacaattttttagttgaccaagtataccgtgttaccgtatataaacgagtatatatatagtgtttaagaatttctatttcttcaagtcacatag |
3127488 |
T |
|
| Q |
233 |
ttatatt |
239 |
Q |
| |
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||||||| |
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| T |
3127489 |
ttatatt |
3127495 |
T |
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