View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_low_3 (Length: 643)
Name: NF0697_low_3
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 172 - 540
Target Start/End: Original strand, 28930757 - 28931125
Alignment:
| Q |
172 |
gtattacacataataagtacaaaatgaaattctcagcagaaacatatgcagagatattgtatttcaaaaaatagaagagatgttactaccataagtcatg |
271 |
Q |
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| T |
28930757 |
gtattacacataataagtacaaaatgaaattctcagcagaaacatatgcagagatattgtatttcaaaaaatagaagagatgttactaccataagtcatg |
28930856 |
T |
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| Q |
272 |
gtatagataaaggaaaaagaaagcagaagttgcaccatgttgttatttatcgttaaatcaaatgaaattattaggagggccttatgataaaattcattat |
371 |
Q |
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| T |
28930857 |
gtatagataaaggaaaaagaaagcagaagtagcaccatgttgttatttatcgttaaatcaaatgaaattattaggagggccttatgataaaattcattat |
28930956 |
T |
|
| Q |
372 |
aaaatacaaaatggatatataaatgacacagacgttacgaaccaatcacagatttatccatatatatagaaattattgagcaaataattcaagataactt |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28930957 |
aaaatacaaaatggatatataaatgacacagacgttacgaaccaatcacagatttatccatatatatagaaattattgagcaaataattcaagataactt |
28931056 |
T |
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| Q |
472 |
ttgaaccaaaacctttaaccatgcattattgagcaaatatcaactacaaatttgaaattcccaattgat |
540 |
Q |
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| T |
28931057 |
ttgaaccaaaacctttaaccatgcattattgagcaaatatcaactacaaatttgaaattcccaattgat |
28931125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 28930538 - 28930705
Alignment:
| Q |
16 |
atagtccgagatcatcttacacccaataaatcccagtacaacagcaatggacggctaacaagaacaaaatatggatattaatggtaaggatggaagcata |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28930538 |
atagtccgagatcatcttacacccaataaatcccagtacaacagcaatggacggctaacaagaacaaaatatggatattaatggtaaggatggaagcata |
28930637 |
T |
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| Q |
116 |
aataaacagaagcgttgtaatatttgtaatatttcatatcaatggattttcagcatgtattacacata |
183 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28930638 |
aataaacagaagcgttgtaatatttgtaatatttcatatcaatggattttcagtatgtattacacata |
28930705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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