View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_low_36 (Length: 205)
Name: NF0697_low_36
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 31216031 - 31216217
Alignment:
| Q |
1 |
tgaaaatgaaattcaagctttgacagaaatcaggcatcgtaacatcataaagctctatggatattgccgacattcaagattctcatttttggtttataag |
100 |
Q |
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| T |
31216031 |
tgaaaatgaaattcaagctttgacagaaatcaggcatcgtaacatcataaagctctatggatattgccgacattcaagattctcatttttggtttataag |
31216130 |
T |
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| Q |
101 |
ttcttggaaggtggaactttgactcaaatgttaaacaatgacacacaagccattgcatttgattgggaaaagagggtgaatattgtt |
187 |
Q |
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| T |
31216131 |
ttcttggaaggtggaactttgactcaaatgttaaacaatgacacacaagccattgcatttgattgggaaaagagggtgaatattgtt |
31216217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 31058837 - 31058983
Alignment:
| Q |
41 |
aacatcataaagctctatggatattgccgacattcaagattctcatttttggtttataagttcttggaaggtggaa-ctttgactcaaatgttaaacaat |
139 |
Q |
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| T |
31058837 |
aacatcataaaacttcatggattttgctcacattctaaattctcgtttttggtttacaagttcttggaaggtggaagcttaga-tcaaatactaaacaat |
31058935 |
T |
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| Q |
140 |
gacacacaagccattgcatttgattgggaaaagagggtgaatattgtt |
187 |
Q |
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| T |
31058936 |
gacacacaagccgttgcatttgattgggaaaagagggtgaatgttgtt |
31058983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 41 - 187
Target Start/End: Original strand, 31140640 - 31140786
Alignment:
| Q |
41 |
aacatcataaagctctatggatattgccgacattcaagattctcatttttggtttataagttcttggaaggtggaactttgactcaaatgttaaacaatg |
140 |
Q |
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| T |
31140640 |
aacatcataaagcttcatggattttgctcacattctaaattctcatttttggtttacaagttcttggaaggaggaagcttaggtcaaatgctaaacagtg |
31140739 |
T |
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| Q |
141 |
acacacaagccattgcatttgattgggaaaagagggtgaatattgtt |
187 |
Q |
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| T |
31140740 |
atacacaagccactgcatttgattgggaaaagagggtgaatgttgtt |
31140786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 59 - 187
Target Start/End: Original strand, 31184379 - 31184507
Alignment:
| Q |
59 |
ggatattgccgacattcaagattctcatttttggtttataagttcttggaaggtggaa-ctttgactcaaatgttaaacaatgacacacaagccattgca |
157 |
Q |
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| T |
31184379 |
ggatattgccaacattctaagttctcatttttggtttacaagttcatggaaggtggaagcttaga-tcaaataataaacaatgaaaaacaagccattgca |
31184477 |
T |
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| Q |
158 |
tttgattgggaaaagagggtgaatattgtt |
187 |
Q |
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| T |
31184478 |
tttgattgggaaaagagggtgaatgttgtt |
31184507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 31103284 - 31103427
Alignment:
| Q |
44 |
atcataaagctctatggatattgccgacattcaagattctcatttttggtttataagttcttggaaggtggaa-ctttgactcaaatgttaaacaatgac |
142 |
Q |
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||||||||||| |||||| |||| |||||| | ||||||||||| ||||| |||||| |||||||||||| ||| || |||||| |||||||||| |
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| T |
31103284 |
atcataaagcttcatggattttgctcacattctaagttctcatttttagtttacaagttcatggaaggtggaagcttaga-tcaaatactaaacaatgaa |
31103382 |
T |
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| Q |
143 |
acacaagccattgcatttgattgggaaaagagggtgaatattgtt |
187 |
Q |
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| T |
31103383 |
aaacaagccattgcatttgattgggaaaagagggtgaatgttgtt |
31103427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 31159555 - 31159618
Alignment:
| Q |
124 |
tcaaatgttaaacaatgacacacaagccattgcatttgattgggaaaagagggtgaatattgtt |
187 |
Q |
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| T |
31159555 |
tcaaatgctaaacagtgatacacaagccactgcatttgattgggaaaagagggtgaatgttgtt |
31159618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 31241666 - 31241721
Alignment:
| Q |
132 |
taaacaatgacacacaagccattgcatttgattgggaaaagagggtgaatattgtt |
187 |
Q |
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| T |
31241666 |
taaacagtgatacacaagccactgcatttgattgggaaaagagggtgaatgttgtt |
31241721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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