View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_low_4 (Length: 615)
Name: NF0697_low_4
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 67 - 470
Target Start/End: Complemental strand, 4211774 - 4211371
Alignment:
| Q |
67 |
catcatcaccaacattctgggctggtctctacagctggtttactcccaccatcttcttcctcctccttcaacttgtcatagctaccatttacatcacttc |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4211774 |
catcatcaccaacattctgggctggtctctacagctggtttactcccaccatcttcttcctcctccttcaacttgtcatagctaccatttacatcacttc |
4211675 |
T |
|
| Q |
167 |
cactcttgccaatgccacccaaaaacatctccaacaacaagatcctaactttcaacaaccccatcaccaacaactctttagatctccttctgttttacaa |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4211674 |
cactcttgccaatgccacccaaaaacatctccaacaacaagatcctaactttcaacaaccccatcaccaacaactctttagatctccttctgttttacaa |
4211575 |
T |
|
| Q |
267 |
agactcaaatccatcaacttttactcttaccaaccttatagatcccaacaagaacaacctcaacaatatcaacaacttcaaacgtacgaaaatgaaatcc |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4211574 |
agactcaaatccatcaacttttactcttaccaaccttatagatcccaacaagaacaacctcaacaatatcaacaacttcaaacgtacgaaaatgaaatcc |
4211475 |
T |
|
| Q |
367 |
atgttcctcaacttgctagatctccttctgttttacaaatactcaaatccattaacctttatagattcttacctacactccccttcactactattctctc |
466 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||| | ||||| |
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| T |
4211474 |
atgttcctcaacttgctagatctccttctgttttacaaagactcaaatccattaacctttatagttacttacctacacaacccttcactacaaagctctc |
4211375 |
T |
|
| Q |
467 |
accc |
470 |
Q |
| |
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|||| |
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|
| T |
4211374 |
accc |
4211371 |
T |
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