View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0697_low_6 (Length: 578)

Name: NF0697_low_6
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0697_low_6
NF0697_low_6
[»] chr4 (9 HSPs)
chr4 (295-570)||(44693049-44693324)
chr4 (29-297)||(44693695-44693967)
chr4 (295-570)||(44654518-44654793)
chr4 (295-570)||(44683317-44683592)
chr4 (298-569)||(44632653-44632924)
chr4 (296-569)||(44635916-44636189)
chr4 (295-503)||(44625430-44625638)
chr4 (29-81)||(44633877-44633928)
chr4 (29-61)||(44693604-44693636)
[»] chr6 (2 HSPs)
chr6 (307-530)||(3205088-3205311)
chr6 (219-252)||(5555805-5555838)
[»] chr7 (1 HSPs)
chr7 (215-285)||(5013552-5013623)


Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 295 - 570
Target Start/End: Complemental strand, 44693324 - 44693049
Alignment:
Q  295 gctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa 394  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693324 gctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa 44693225  T
Q  395 ggaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacg 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693224 ggaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacg 44693125  T
Q  495 agcaatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgct 570  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693124 agcaatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgct 44693049  T

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Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 29 - 297
Target Start/End: Complemental strand, 44693967 - 44693695
Alignment:
Q  29 aaaaagaaccctgaaatgcaagcaaaccttcagattctgagggacaaaattgtgtactctcctctcgatatttttatttatttagcaagcatttttcttt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  44693967 aaaaagaaccctgaaatgcaagcaaaccttcagattctgagggacaaaattgtgtactctcctctcgatatttttatttgcttagcaagcatttttcttt 44693868  T
Q  129 tgtgcaaaaacgtgaggtacaaaaccatataacatactgaagcagggttacactactaaactcacaaacctaacccatcagagaac----gagtattcaa 224  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||    
T  44693867 tgtgcaaaaatgtgaggtacaaaaccatataacatactgaagcagggttacactactaaactcacaaacctaacccatcagagaacaagtgagtattcaa 44693768  T
Q  225 acactacagttgaagtgttatgttcactcttgtatctccaaacttcaccttattgtggtcaatagctgttgct 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693767 acactacagttgaagtgttatgttcactcttgtatctccaaacttcaccttattgtggtcaatagctgttgct 44693695  T

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Target: chr4; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 295 - 570
Target Start/End: Complemental strand, 44654793 - 44654518
Alignment:
Q  295 gctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa 394  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44654793 gctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa 44654694  T
Q  395 ggaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacg 494  Q
    |||||||||||||||||||||||||| | | ||||||||||||  |||||||||||||||||||||||||||||||||| ||||| |||||||| || ||    
T  44654693 ggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatcgcttgacgctggcg 44654594  T
Q  495 agcaatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgct 570  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44654593 agcaatacccaacccagagagatatttagactcagcctcaccctcggctcgcttaatttgcaagattttctctgct 44654518  T

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Target: chr4; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 295 - 570
Target Start/End: Complemental strand, 44683592 - 44683317
Alignment:
Q  295 gctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa 394  Q
    ||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44683592 gctacatcacgaacagcgccaggtccgtgtggaatgaacacagcagaagacttggaggcagccccaatttctttcatagtgtcaaagtattgagtgacaa 44683493  T
Q  395 ggaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacg 494  Q
    |||||||||||||||||||||||||| | | ||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||| || ||    
T  44683492 ggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgctggcg 44683393  T
Q  495 agcaatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgct 570  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44683392 agcaatacccaacccagagagatatttagactcagcctcaccctcggctcgcttaatttgcaagattttctctgct 44683317  T

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Target: chr4; HSP #5
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 298 - 569
Target Start/End: Complemental strand, 44632924 - 44632653
Alignment:
Q  298 acatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaagga 397  Q
    ||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  44632924 acatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaagga 44632825  T
Q  398 ccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagc 497  Q
    ||||||||||||||||||||||||||| ||||||||||||  | || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  44632824 ccatatccatgacatcttttgcacttgtccctggtacattaaccgagaatccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagc 44632725  T
Q  498 aatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgc 569  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  44632724 aatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttctctgc 44632653  T

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Target: chr4; HSP #6
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 296 - 569
Target Start/End: Original strand, 44635916 - 44636189
Alignment:
Q  296 ctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaag 395  Q
    ||||||| |||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44635916 ctacatcgcgaacagcaccaggtccgtgtggaatgaacacagcagaagatttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaag 44636015  T
Q  396 gaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacga 495  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44636016 gaccaaatccatgacatctttagcacttgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttgacga 44636115  T
Q  496 gcaatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgc 569  Q
    |||||||||| ||||  |||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||    
T  44636116 gcaatacccaccccatggagatatttagattcagcctcaccctcggctcgctttacttgcaagatcttctctgc 44636189  T

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Target: chr4; HSP #7
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 295 - 503
Target Start/End: Complemental strand, 44625638 - 44625430
Alignment:
Q  295 gctacatcacgaacagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa 394  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44625638 gctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaa 44625539  T
Q  395 ggaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacg 494  Q
    |||||||||||||||||||||||||| | | ||||||||||||  |||||||||||||||||||||||||||||||||| ||||| |||||||| || ||    
T  44625538 ggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccatccacaatcgcttgacgctggcg 44625439  T
Q  495 agcaatacc 503  Q
    |||||||||    
T  44625438 agcaatacc 44625430  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 44633928 - 44633877
Alignment:
Q  29 aaaaagaaccctgaaatgcaagcaaaccttcagattctgagggacaaaattgt 81  Q
    ||||||||| ||| |||||||||||||||||| |||| |||||||||||||||    
T  44633928 aaaaagaacactggaatgcaagcaaaccttcatattc-gagggacaaaattgt 44633877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 44693636 - 44693604
Alignment:
Q  29 aaaaagaaccctgaaatgcaagcaaaccttcag 61  Q
    |||||||||||||||||||||||||||||||||    
T  44693636 aaaaagaaccctgaaatgcaagcaaaccttcag 44693604  T

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Target: chr6 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 307 - 530
Target Start/End: Complemental strand, 3205311 - 3205088
Alignment:
Q  307 acagcactaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcatagtgtcaaagtattgagtgacaaggaccatatcca 406  Q
    ||||||| ||| |||||||||||||||||||  || || || ||||  ||||||||||| ||||| ||||| ||||||||||| || |  ||||| ||||    
T  3205311 acagcaccaggaccatgtggaatgaacacagatgacgattttgaggatgcaccaatttccttcatggtgtcgaagtattgagtcaccaacaccatgtcca 3205212  T
Q  407 tgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccatctacaatggcttgacgttgacgagcaatacccat 506  Q
    |||||||||| ||| |||  || || ||||||||||| ||| ||| ||| ||||||||||  || || ||||| ||||||||||| ||||| ||||| |     
T  3205211 tgacatctttagcagttgttccgggaacattctctgagaatgcaagcacgctgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgag 3205112  T
Q  507 cccagagagatatttagactcagc 530  Q
     || || |||||||| ||||||||    
T  3205111 tcctgacagatatttggactcagc 3205088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 5555838 - 5555805
Alignment:
Q  219 attcaaacactacagttgaagtgttatgttcact 252  Q
    |||||||||| |||||||||||||||||||||||    
T  5555838 attcaaacacaacagttgaagtgttatgttcact 5555805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 215 - 285
Target Start/End: Complemental strand, 5013623 - 5013552
Alignment:
Q  215 gagtattcaaacacta-cagttgaagtgttatgttcactcttgtatctccaaacttcaccttattgtggtca 285  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||| | || |||||| ||||||    
T  5013623 gagtattcaaacactaacagttgaagtgttatgttcactcttgtgtctccaaattccatcttattctggtca 5013552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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