View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0697_low_7 (Length: 516)
Name: NF0697_low_7
Description: NF0697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0697_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 31492904 - 31493117
Alignment:
| Q |
9 |
caacaatatcagttcattaaaagtcaattcttgtcaaagcagtcgaacatacacataaacacatgctatagttag-ctgtttgatttttggtattaggca |
107 |
Q |
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| T |
31492904 |
caacaaaatcagttcattaaaagtcaattcttgtcaaagcagtcaaacatagacataaacacatgctatagttaggctgtttgatttttggtattaggcg |
31493003 |
T |
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| Q |
108 |
aaagcctgaatttagtattctactagtagtggtatggctacaatcatttttctagaggatttttcacctaatcatgtgcatctttaaagctaactaacgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31493004 |
aaagcctgaatttagtattctactagtagtggtatggctacaatcatttttctagaggatttttcacctaatcatgtgcatctttaaagctaactaacat |
31493103 |
T |
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| Q |
208 |
taggccaaagccta |
221 |
Q |
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|||||||||||||| |
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| T |
31493104 |
taggccaaagccta |
31493117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 31493190 - 31493264
Alignment:
| Q |
347 |
tcgagtaaatagctaaatgaccttggtctttgagggtagcttgtgtgccaggtgcattagggtatgtgtagaatt |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31493190 |
tcgagtaaatagctaaatgaccttggtctttgagggtagcttgtgtgccaggtgcattagggtatgtgtagaatt |
31493264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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