View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0698_high_1 (Length: 352)

Name: NF0698_high_1
Description: NF0698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0698_high_1
NF0698_high_1
[»] chr4 (2 HSPs)
chr4 (1-285)||(54647884-54648157)
chr4 (284-323)||(54647825-54647864)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 54648157 - 54647884
Alignment:
Q  1 aaaaatatttatattacatttgtttcttaactaataatgcaacatgcatcatgcatcgattatcattttccatgtaatattatatcattgtagcggtgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  54648157 aaaaatatttatattacatttgtttcttaactaataatgca-------tcatgcatcgattatcattttccatg----attatatcattgtagcggtgtt 54648069  T
Q  101 tacaacgattctagtatctgagtacagtataaaaatataatatttgggtgctagagtatgaaatccacagtagctcacacggttgatttgaattttcggg 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||    
T  54648068 tacaacgattctagtatctgagtgcagtataaaaatataatatttgggtgctagagtatgaaatccacagtagctcacacggttgaattcacttttcggg 54647969  T
Q  201 ctgctaatttacagcaacacatgtcagttgtgggaaacttcaagttagtttgttcttcttgtgcaacaaacacccatattttctt 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  54647968 ctgctaatttacagcaacacatgtcagttgtgggaaacttcaagttagtttgttcttctgttgcaacaaacacccatattttctt 54647884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 54647864 - 54647825
Alignment:
Q  284 ttatatacaagccctcttagaacatgcgttgaaacaattc 323  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  54647864 ttatatacaagccctcttagaacatgcgtcgaaacaattc 54647825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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