View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0698_high_3 (Length: 249)
Name: NF0698_high_3
Description: NF0698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0698_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 17983460 - 17983694
Alignment:
| Q |
9 |
tttttacctttgatggtcatgattattatcattataaagatgaagatatagatgaagctgaggaggttgatgatggcaaagaggaaaaggacgacgagga |
108 |
Q |
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| T |
17983460 |
tttttacctttgatggtcgtgattattatcattataaagatgaagatatagatgaagctgaggaggttgatgatggcaaagaggaaaaggatgacgacta |
17983559 |
T |
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| Q |
109 |
tgagaagagacagtcctgaaagtctttgttatgttaaaaattatgagaataaatattgattaataataaaactttatcttaacttctctttttgcttaag |
208 |
Q |
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| T |
17983560 |
tgataagggacagtcctgaaattctttgttctgttaaaaattatgagaataaatattgattaataataaaactttatcttaacttctctttttgcttaag |
17983659 |
T |
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| Q |
209 |
tttattttttcttcagtcatcataagaattatcta |
243 |
Q |
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| T |
17983660 |
ttttttttttcttcagtcatcataagaattatcta |
17983694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 17975820 - 17976044
Alignment:
| Q |
9 |
tttttacctttgatggtcatgattattatcattataaagatgaagatatagatgaagctgaggaggttgatgatggcaaagaggaaaaggacgacgagga |
108 |
Q |
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| T |
17975820 |
tttttacctttgatggtcgtgattactatcatgttcaagatgaagctatagatgaagctgaggaggttgatgatggcaaagaagaaacagacgacgacga |
17975919 |
T |
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| Q |
109 |
tgagaagagacagtcctgaaagtctt-----tgttatgttaaaaattatgagaataaatattgattaa---taataaaactttatcttaacttctctttt |
200 |
Q |
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| T |
17975920 |
tgataagggacagtcctgaaattctttgttatgttatgttaaaaattatgagaataaatattgattaatattaataaaactttatctcaacttctctttt |
17976019 |
T |
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| Q |
201 |
tgcttaagtttattttttcttcagtc |
226 |
Q |
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| T |
17976020 |
tgc-taagattgttttttcttcagtc |
17976044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 17986787 - 17987013
Alignment:
| Q |
16 |
ctttgatggtcatgattattatcattataaagatgaagat-ata-----gatgaagctgaggaggttgatgatggcaaagaggaaaaggacgacga---g |
106 |
Q |
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| T |
17986787 |
ctttgatggtcatgattattatcatgttaaagatgaagatgatacttatgatgaagctgaagaggttgatgatggcaaagaggagaaggacgacgaagag |
17986886 |
T |
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| Q |
107 |
gatgagaagagacagtcctgaaagtctttgttatgttaaaaattatgagaataaatattgattaataataaaactttatcttaacttctctttttgctta |
206 |
Q |
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| T |
17986887 |
gatgataaggaacagtcctgaaattctttgttatgtaaaaaattatgagaataaatattgattaataat-aaactttatctcaacttctctttttgc-ta |
17986984 |
T |
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| Q |
207 |
agtttatttttt---cttcagtcatcata |
232 |
Q |
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| T |
17986985 |
agttttttttttttccttcagtcatcata |
17987013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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