View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0698_low_13 (Length: 229)
Name: NF0698_low_13
Description: NF0698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0698_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 45209811 - 45209684
Alignment:
| Q |
1 |
tataaatcaattgctatgaaatttgctaagatagaagctgacatggtgagctagaatggaaaacaaaatagctttgtgttactcagacattaaaaaatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45209811 |
tataaatcaattgctatgaaatttgctaagatagaagctgacatggtgagctagaatggaaaacaaaatagctttgtgttactcagacattaaaaaatta |
45209712 |
T |
|
| Q |
101 |
tcacggaaataaaaagaaagattaaatt |
128 |
Q |
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| T |
45209711 |
tcacggaaataaaaagaaagattaaatt |
45209684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 674851 - 674977
Alignment:
| Q |
1 |
tataaatcaattgctatgaaatttgctaagatagaagctgacatggtgagctagaatggaaaacaaaatagctttgtgttactcagacattaaaaaatta |
100 |
Q |
| |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || ||||| |||||| |||||| ||||||||||||||| |
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| T |
674851 |
tataaaccaattgctatgaaatttgc-aagatagaagctgacatggtgagcaagaatggaagaccaaatatctttgtattactcggacattaaaaaatta |
674949 |
T |
|
| Q |
101 |
tcacggaaataaaaagaaagattaaatt |
128 |
Q |
| |
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|||| |||||||||||||||||||||| |
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| T |
674950 |
tcacataaataaaaagaaagattaaatt |
674977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 27749761 - 27749699
Alignment:
| Q |
66 |
aaatagctttgtgttactcagacattaaaaaattatcacggaaataaaaagaaagattaaatt |
128 |
Q |
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||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
27749761 |
aaatatctttgtgttacttagacattaaaaaactatcacggaaataaaaagaaagattaaatt |
27749699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 27750218 - 27750159
Alignment:
| Q |
1 |
tataaatcaattgctatgaaatttgctaagatagaagctgacatggtgagctagaatggaa |
61 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
27750218 |
tataaatcaattgctatgaaatttgc-aagatagaagctgacatggtgagcaagaatggaa |
27750159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 22352485 - 22352583
Alignment:
| Q |
3 |
taaatcaattgctatgaaatttgctaagatagaagctgacatggtgagctagaatggaaaacaaaatagctttgtgttactcagacattaaaaaattatc |
102 |
Q |
| |
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|||||||||||||||| |||||| || |||||||| ||||||||||| | ||||||||| || ||||| ||| ||||||| |||||| ||||||| ||| |
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| T |
22352485 |
taaatcaattgctatgcaatttggtacgatagaagttgacatggtgaacaagaatggaagaccaaata--tttatgttactgagacataaaaaaatcatc |
22352582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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