View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0698_low_4 (Length: 352)
Name: NF0698_low_4
Description: NF0698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0698_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 54648157 - 54647884
Alignment:
| Q |
1 |
aaaaatatttatattacatttgtttcttaactaataatgcaacatgcatcatgcatcgattatcattttccatgtaatattatatcattgtagcggtgtt |
100 |
Q |
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| T |
54648157 |
aaaaatatttatattacatttgtttcttaactaataatgca-------tcatgcatcgattatcattttccatg----attatatcattgtagcggtgtt |
54648069 |
T |
|
| Q |
101 |
tacaacgattctagtatctgagtacagtataaaaatataatatttgggtgctagagtatgaaatccacagtagctcacacggttgatttgaattttcggg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| |
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| T |
54648068 |
tacaacgattctagtatctgagtgcagtataaaaatataatatttgggtgctagagtatgaaatccacagtagctcacacggttgaattcacttttcggg |
54647969 |
T |
|
| Q |
201 |
ctgctaatttacagcaacacatgtcagttgtgggaaacttcaagttagtttgttcttcttgtgcaacaaacacccatattttctt |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
54647968 |
ctgctaatttacagcaacacatgtcagttgtgggaaacttcaagttagtttgttcttctgttgcaacaaacacccatattttctt |
54647884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 323
Target Start/End: Complemental strand, 54647864 - 54647825
Alignment:
| Q |
284 |
ttatatacaagccctcttagaacatgcgttgaaacaattc |
323 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||| |
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| T |
54647864 |
ttatatacaagccctcttagaacatgcgtcgaaacaattc |
54647825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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