View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0698_low_5 (Length: 333)
Name: NF0698_low_5
Description: NF0698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0698_low_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 333
Target Start/End: Complemental strand, 48589099 - 48588776
Alignment:
| Q |
13 |
aatatgaagaggaagatcgtcgctgtcaccgatatctgtaacagatcggagtcggagctgaatggaaactccacgagaaagaagaa---accgattcatc |
109 |
Q |
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| T |
48589099 |
aataggaagaggaagatcgtcgctgtcaccgatctctataacagatcggagtcggagctgaatggaaactccacgagaaagaagaagaaaccgattcatc |
48589000 |
T |
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| Q |
110 |
aagttagttaatacatgattgtttaattttgatgatttaactatacgtattatgttctgattacagaataataattcaattcaatttgtaggagaaggaa |
209 |
Q |
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| T |
48588999 |
aagttagttaatacatgattgtttaattttgatgatttaactatacgtattatgttctgattacagagtaataattcaattcaatttgtaggagaaggaa |
48588900 |
T |
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| Q |
210 |
ggtgattttggcaagggactaatggatgtatataaggtcaacaaagccaaaaatggaattgaagataccaaacaacaggtgagaagaaaattgcagcata |
309 |
Q |
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| T |
48588899 |
ggtgattttggcaagggactaatggatgtgtataaggtcaacaaagccaaaaatggaattgaagataccaaacaacaggtgagaagaaaattgcagcata |
48588800 |
T |
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| Q |
310 |
attgatgtgatattgattcatagt |
333 |
Q |
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| T |
48588799 |
attgatgtgatattgattcatagt |
48588776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 48588539 - 48588482
Alignment:
| Q |
243 |
aaggtcaacaaagccaaaaatggaattgaagataccaaacaacaggtgagaagaaaat |
300 |
Q |
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| T |
48588539 |
aaggttaacaaagccaaaaatggagtcgaagataccaaacaacgggtgagaagaaaat |
48588482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 261
Target Start/End: Original strand, 42579161 - 42579234
Alignment:
| Q |
188 |
attcaatttgtaggagaaggaaggtgattttggcaagggactaatggatgtatataaggtcaacaaagccaaaa |
261 |
Q |
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| T |
42579161 |
attcaatttgttggagaaggaatgtgattttggcaagggattaatggatttgtataaagtaaataaggccaaaa |
42579234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 6462230 - 6462179
Alignment:
| Q |
193 |
atttgtaggagaaggaaggtgattttggcaagggactaatggatgtatataa |
244 |
Q |
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| T |
6462230 |
atttgttggagaaggaatgtgattttggcaagggattaatggatctatataa |
6462179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 39062581 - 39062525
Alignment:
| Q |
188 |
attcaatttgtaggagaaggaaggtgattttggcaagggactaatggatgtatataa |
244 |
Q |
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| T |
39062581 |
attcaatttgttgaaaaaggaatgtgattttggcaagggattaatggatctatataa |
39062525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 17057382 - 17057332
Alignment:
| Q |
131 |
tttaattttgatgatttaactatacgtattatgttctgattacagaataat |
181 |
Q |
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| T |
17057382 |
tttaattttgatgatttaatcgtacatattatgttctgattacacaataat |
17057332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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