View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0698_low_7 (Length: 307)
Name: NF0698_low_7
Description: NF0698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0698_low_7 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 86 - 307
Target Start/End: Original strand, 36552456 - 36552677
Alignment:
| Q |
86 |
cctatttgctagcaatggatacaattttgagtttggagagctagaagaagcaattgttatgcaaggattgaaatgatgaaacataagcatgtgggtcttc |
185 |
Q |
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| T |
36552456 |
cctatttgctagcaatggatacaattttgagtttggagagctagaagaagcaattgttatgcaaggattgaaatgatgaaacataagcatgtgggtcttc |
36552555 |
T |
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| Q |
186 |
ctcttctatctattacctctttattttttccttctaagataagtataaccaactcttgctaaaaagatttaaaaacgaaaaaggttcgagtgaatatgct |
285 |
Q |
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| T |
36552556 |
ctcttctatctattacctctttattttttccttctaagataagtataaccaactcttgctaaaaagatttaaaaacgaaaaaggttcgagtgaatatgct |
36552655 |
T |
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| Q |
286 |
caaagaatgcattggggttttt |
307 |
Q |
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|||||||||||||||||||||| |
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| T |
36552656 |
caaagaatgcattggggttttt |
36552677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 86 - 307
Target Start/End: Complemental strand, 36559689 - 36559468
Alignment:
| Q |
86 |
cctatttgctagcaatggatacaattttgagtttggagagctagaagaagcaattgttatgcaaggattgaaatgatgaaacataagcatgtgggtcttc |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36559689 |
cctatttgctagcaatggatacaattttgagtttggagagctagaagaagcaattgttatgcaaggattgaaatgatgaaacataagcatgtgggtcttc |
36559590 |
T |
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| Q |
186 |
ctcttctatctattacctctttattttttccttctaagataagtataaccaactcttgctaaaaagatttaaaaacgaaaaaggttcgagtgaatatgct |
285 |
Q |
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| T |
36559589 |
ctcttctatctattacctctttattttttccttctaagataagtataaccaactcttgctaaaaagatttaaaaacgaaaaaggttcgagtgaatatgct |
36559490 |
T |
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| Q |
286 |
caaagaatgcattggggttttt |
307 |
Q |
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| T |
36559489 |
caaagaatgcattggggttttt |
36559468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 152
Target Start/End: Original strand, 36332053 - 36332095
Alignment:
| Q |
110 |
ttttgagtttggagagctagaagaagcaattgttatgcaagga |
152 |
Q |
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|||||| ||||| ||||||||||||||||||||| |||||||| |
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| T |
36332053 |
ttttgattttggggagctagaagaagcaattgttttgcaagga |
36332095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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