View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0699_high_9 (Length: 251)
Name: NF0699_high_9
Description: NF0699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0699_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 48850623 - 48850755
Alignment:
| Q |
120 |
gtacttgtgcaaaagataaa-gtttttgaataagtagtcaataatactaataatgttgttcaactgaaagagtactagaaaaaatgttggtgcttaccta |
218 |
Q |
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| T |
48850623 |
gtacttgtgcaaaagataaaagtttttgaataagtagtcaataatactaataatgttgtgcaactgaaagagtactagaaaaaatgttggtgcttaccta |
48850722 |
T |
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| Q |
219 |
aaagtacagatagaagaagattctcgcagcgcc |
251 |
Q |
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| T |
48850723 |
aaagtacagatagaagaagattctcacagcgcc |
48850755 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 48850511 - 48850583
Alignment:
| Q |
11 |
cacagaaggaacacaaccaacaaatcttgaatctataaagagcatgcatataacaaatcataagaaaatcaac |
83 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
48850511 |
cacagaaggaacacaaccaacaaatcttgaatctataataaacatgcatataacaaatcataagaaaatcaac |
48850583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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