View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0699_low_1 (Length: 559)
Name: NF0699_low_1
Description: NF0699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0699_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 30 - 552
Target Start/End: Complemental strand, 35836286 - 35835759
Alignment:
| Q |
30 |
ttttgcatggtaattctattctttcttacaaattcttacctttttactttttatctatcaatgtcattgtatcatgtgtcagacacaaggacatacattt |
129 |
Q |
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| T |
35836286 |
ttttgcatggtaattctattctttcttacaaattcttacctttttactttttatctatcaatgtcatcgtatcatgtgtcagacacaaggatatgccttt |
35836187 |
T |
|
| Q |
130 |
gatcagaaatgtcgatgctacaaagatttttatccctttcttttaggaaaagaattaaatttttatgatactcta-aaaaggttgcttgctaatagggtt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35836186 |
catcagaaatgtcgatgctacaaagatttttatccctttcttttaggaaaagaattaaatttttatgatactctaaaaaaggttgcttgctaatagggtt |
35836087 |
T |
|
| Q |
229 |
attccatgtttcttcattgttatggttttggtttgttactttgttatcagctttgcat----nnnnnnnnttcagggtttgaaaaagttagttaattggt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35836086 |
attccatgtttcttcattgttatggttttggtttgttactttgttatcagctttgcataaaaaaaaaaaattcagggtttgaaaaagttagttaattggt |
35835987 |
T |
|
| Q |
325 |
tatgtgggtgtgannnnnnnnnnnctttcagctcaaaccatagtgttgggaatcctctgagaagaagatactgagcttggttatgtatttgttgagggaa |
424 |
Q |
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| T |
35835986 |
tatgtgggtatgattttttttttt-tttcagctcaaaccatagtgttgggaatcctctgagaagaagatactgagcttggttatgtatttgttgagggaa |
35835888 |
T |
|
| Q |
425 |
gggttgtaaggaaggattcatagaa-aatgagagaccctgatgttatctttgtaccaactgctgcatttatttttgctttcctttgtaacatacaagttt |
523 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35835887 |
gggttgtaaggaaggattcatagaaggatgagagaccctgatgttatctttgtaccaactgctgcatttatttttgctttcctttgtaacatacaagttt |
35835788 |
T |
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| Q |
524 |
tgcttagttgattagttaccttcatctca |
552 |
Q |
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| T |
35835787 |
tgcttagttgattagttaccttcatctca |
35835759 |
T |
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