View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0699_low_11 (Length: 283)
Name: NF0699_low_11
Description: NF0699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0699_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 31101460 - 31101727
Alignment:
| Q |
1 |
gttaccaaactaaaagtgaatttgaagcgattaagaacacacagataagggacaaagtttattcctcaacgttaattgcttgaagaaagggaaacaaggt |
100 |
Q |
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| T |
31101460 |
gttaccaaactaaaagtgaatttgaagcgattaagaacacacagataagggacaaagtttattcctcaacgttaattgcttgaagaaagggaaacaaggt |
31101559 |
T |
|
| Q |
101 |
tgaggactataacctgatacctaagctaaatttctatttcgattacaataatatataagcttatttgagaaatcacactagctactttgggagctgttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101560 |
tgaggactataacctgatacctaagctaaatttctatttcgattacaataatatataagcttatttgagaaatcacactagctactttgggagctgttaa |
31101659 |
T |
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| Q |
201 |
tgcagtggtagaaaacttgaatgcaagctgatactcgtaacacacatgaattgatttatatacttcag |
268 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101660 |
tgcagtggtagaaaacttgactgtaagctgatactcgtaacacacatgaattgatttatatacttcag |
31101727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 66 - 235
Target Start/End: Original strand, 38897874 - 38898041
Alignment:
| Q |
66 |
tcaacgttaattgcttgaagaaagggaaacaaggttgaggactataacctgatacctaagctaaatttctatttcgattacaataatatataagcttatt |
165 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
38897874 |
tcaatgttaattgcttgaagaaagggaaaca--gttgaggactataagctgatacctaagctaaatttctatttcaattacaatggtatataagcttatt |
38897971 |
T |
|
| Q |
166 |
tgagaaatcacactagctactttgggagctgttaatgcagtggtagaaaacttgaatgcaagctgatact |
235 |
Q |
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| T |
38897972 |
tgagaaatcatactagctattttgggagctgttaatgaagtggtagaaaacttgaatgtaagctgatact |
38898041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 35426780 - 35426733
Alignment:
| Q |
46 |
taagggacaaagtttattcctcaacgttaattgcttgaagaaagggaa |
93 |
Q |
| |
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||||||||| ||||| | ||||||| |||||||||||||||||||||| |
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| T |
35426780 |
taagggacatagtttctccctcaactttaattgcttgaagaaagggaa |
35426733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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