View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0699_low_13 (Length: 257)
Name: NF0699_low_13
Description: NF0699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0699_low_13 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 29 - 257
Target Start/End: Original strand, 31101122 - 31101350
Alignment:
| Q |
29 |
aattatccgggaaacattctctattagtagaattaggtgtcaccacttcaaagactccatcactgtctcactgatatcacagactaagattcgagggttg |
128 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101122 |
aattatcctggaaacattctctaatagtagaattaggtgtcgccacttcaaagactccatcactgtctcactgatatcacagactaagattcgagggttg |
31101221 |
T |
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| Q |
129 |
ctcggaaatattgaagttaccaccaaaaatcttaaataaggaaaaacattaaaaacctttaacctttaaacctttggttggtgtattttatttaggagta |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101222 |
ctcggaaatattgaagttaccaccaaaaatcttaaataaggaaaaacattaaaaacctttaacctttaaacctttggttggtgtattttatttaggagta |
31101321 |
T |
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| Q |
229 |
gtcatcaattttaaaatttgcacggtgac |
257 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
31101322 |
gtcatcaattttaaaatttgcacggtgac |
31101350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 131
Target Start/End: Original strand, 31101017 - 31101119
Alignment:
| Q |
29 |
aattatccgggaaacattctctattagtagaattaggtgtcaccacttcaaagactccatcactgtctcactgatatcacagactaagattcgagggttg |
128 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31101017 |
aattatcctggaaacattctctaatagtagaattaggtgtcgccacttcaaagactccatcactgtctcactgatatcacagactaagattcgagggttg |
31101116 |
T |
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| Q |
129 |
ctc |
131 |
Q |
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||| |
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| T |
31101117 |
ctc |
31101119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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