View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0699_low_16 (Length: 251)
Name: NF0699_low_16
Description: NF0699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0699_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 40457318 - 40457555
Alignment:
| Q |
1 |
ataaacagcttgaacgcttgggagtggagttgtagcaagaacacgacagcggactccatccaagtgtgaatccaaaccagccnnnnnnntataaacacgt |
100 |
Q |
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| T |
40457318 |
ataaacagcttgaacgcttgggagtggagttgtagcaagaacacgaccgcggactccatccaagtgtgaatccaaaccagccagaaaaatataaacacgt |
40457417 |
T |
|
| Q |
101 |
tgagaattaacagtggtgttatacttctcaacatctttagtgcactccatggtacaattttcaatggcatcatactcttgccacaacctttttaattttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40457418 |
tgagaattaacagtggtgttatacttctcaacatctttagtgcactccatggtacaatttgcaatggcatcatactcttgccacaacctttttaattttc |
40457517 |
T |
|
| Q |
201 |
caaaatatataatcacagaaccaccattttgatgagta |
238 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| |
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| T |
40457518 |
caaaatatataatcatagaaccaccattttgatgagta |
40457555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 40088882 - 40088836
Alignment:
| Q |
126 |
tctcaacatctttagtgcactccatggtacaattttcaatggcatca |
172 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |||||| |||||| |
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|
| T |
40088882 |
tctcaacatctttagtgcacaccatggtacaatcttcaatcgcatca |
40088836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 27517618 - 27517838
Alignment:
| Q |
18 |
ttgggagtggagttgtagcaagaacacgacagcggactccatccaagtgtgaatccaaaccagccnnnnnnntataaacacgttgagaattaacagtggt |
117 |
Q |
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| T |
27517618 |
ttgggagcggagtggtagcaaggatacgaccacgaactccatccaaatgtgaatccagcccagccaaaaaaacataaactcgttgtgaattagccatctt |
27517717 |
T |
|
| Q |
118 |
gttatacttctcaacatctttagtgcactccatggtacaattttcaatggcatcatactcttgccacaacctttttaattttccaaaatatataatcaca |
217 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||| | ||| ||||||||||||||||| ||||| | ||||| | ||| || |||| ||| |
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| T |
27517718 |
gttatacttctcaacatctttagggcattccatggtacaatcattaatagcatcatactcttgccataacctctgcaatttactaaagtaagtaataaca |
27517817 |
T |
|
| Q |
218 |
gaaccaccattttgatgagta |
238 |
Q |
| |
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|| ||||||||||| |||||| |
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| T |
27517818 |
gatccaccattttgttgagta |
27517838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 56393380 - 56393601
Alignment:
| Q |
18 |
ttgggagtggagttgtagcaagaacacgacagcggactccatccaagtgtgaatccaaaccagccnnnnnnntataaacacgttgagaattaacagtggt |
117 |
Q |
| |
|
||||||| ||||| |||||||| | ||||| || ||||||||||| |||||||||| |||||| |||||| ||||| |||||||| | | |
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|
| T |
56393380 |
ttgggagcggagtggtagcaaggatacgaccacgaactccatccaaatgtgaatccagcccagccaaaaaaacataaactcgttgggaattaaccatctt |
56393479 |
T |
|
| Q |
118 |
gttatacttctc-aacatctttagtgcactccatggtacaattttcaatggcatcatactcttgccacaacctttttaattttccaaaatatataatcac |
216 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||||||||||||| | ||| ||||||||||||||||| ||||| | ||||| | ||| || |||| || |
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|
| T |
56393480 |
gttatacttctctaacatctttagggcattccatggtacaatcattaatagcatcatactcttgccataacctctgcaatttactaaagtaagtaataac |
56393579 |
T |
|
| Q |
217 |
agaaccaccattttgatgagta |
238 |
Q |
| |
|
||| ||||||||||| |||||| |
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|
| T |
56393580 |
agatccaccattttgttgagta |
56393601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 4242442 - 4242396
Alignment:
| Q |
126 |
tctcaacatctttagtgcactccatggtacaattttcaatggcatca |
172 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |||||| |
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|
| T |
4242442 |
tctcaacatctttagtgcacaccatggtacaatcttcaatcgcatca |
4242396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 8017304 - 8017258
Alignment:
| Q |
126 |
tctcaacatctttagtgcactccatggtacaattttcaatggcatca |
172 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||| |||||| |||||| |
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|
| T |
8017304 |
tctcaacatctttattgcacaccatggtacaatcttcaatcgcatca |
8017258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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