View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0699_low_2 (Length: 523)
Name: NF0699_low_2
Description: NF0699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0699_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 97 - 464
Target Start/End: Original strand, 2772277 - 2772637
Alignment:
| Q |
97 |
taacgcagcttattggatgagctgacattgcaggttctaaactgatttcaacacccatggccacaacctaatgccgtctcttctgcctttacactagaac |
196 |
Q |
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| T |
2772277 |
taacgcagcttattggatgagctgacattgcaggttctaaactgatt---------atggccacaacctaatgccgtctcttctgcctttacactagaac |
2772367 |
T |
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| Q |
197 |
ctatttcaaagtctggttggttctaattagctatcaaagttagctgaaggtttcgttttcaattctatatcatagatatgcttcttcttgcactcgtatg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2772368 |
ctatttcaaagtctggttggttctaattagctatcaaagttagctgaaggtttcgttttcaattctatatcattgatatgcttcttcttgcactcgtatg |
2772467 |
T |
|
| Q |
297 |
aaatgtgcatagcggtaactgtttcaatttctgatttactcttttttaataatattttcgaattcaacctattcataactaaaaatcgctcactttgaa- |
395 |
Q |
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| T |
2772468 |
aaatgtgcatagcggtaactgtttcaatttctgatttactc-tttttaataatattttcgaattcaacctattcataactaaaaatcgctcactttgaaa |
2772566 |
T |
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| Q |
396 |
--aacaacaatagttttagataaacaaacatcaagaaaggtatatttcggcagtgtcattgactctcattt |
464 |
Q |
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| T |
2772567 |
acaacaacaatagttttagataaacaaacatcaagaaaggtatatttgggcagtgtcattgactctcattt |
2772637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 2772246 - 2772280
Alignment:
| Q |
48 |
gaaagttttcctacttccactggaagcttcctaac |
82 |
Q |
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| T |
2772246 |
gaaagttttcctacttccactggaagcttcctaac |
2772280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 514
Target Start/End: Original strand, 2773058 - 2773088
Alignment:
| Q |
484 |
ggtttgtgacagcctctttcaatgttcatct |
514 |
Q |
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| T |
2773058 |
ggtttgtgacagcctctttcaatgttcatct |
2773088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 160
Target Start/End: Original strand, 2794825 - 2794859
Alignment:
| Q |
126 |
gcaggttctaaactgatttcaacacccatggccac |
160 |
Q |
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| T |
2794825 |
gcaggttctaaactgatttcaacatccatggccac |
2794859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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