View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0699_low_3 (Length: 475)
Name: NF0699_low_3
Description: NF0699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0699_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 36813256 - 36812789
Alignment:
| Q |
1 |
attttcaaaaataccccgagaaacctgtcgttgaatatttttccacgactccatgtcatcgatcattgtcgttcaatcagatctagctaacagtattcat |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36813256 |
attttcaaaaataacccgagaaacctgtcgttgaatatttttccacgactccatgtcatcgatcattgtcgttcaatcagatctagctaacagtattcat |
36813157 |
T |
|
| Q |
101 |
ctcatcaagacaccgatacactcagtatcttagttgtaagtatgaaaaaagtcttgagtttttatttctacataatatagtcgatcgtcgttgaaatttc |
200 |
Q |
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|||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36813156 |
ctcaacaagacaacgatacactcactatcttagttgtaagtatgaaaaaaatcttgagtttttatttctaaataatatagtcgatcgtcgttgaaatttc |
36813057 |
T |
|
| Q |
201 |
tggttgattttaattactagtcaacggt-ggatcacctatgttatcaacatatatgtttttctcaccatatgtccgaagtagcatgtcgatccnnnnnnn |
299 |
Q |
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|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36813056 |
tgattgattttaattactagtcaacggtgggatcacctatgttatcaacatatatgtttttctcaccatatgtccgaagtagcatgtcgatccaaaaaaa |
36812957 |
T |
|
| Q |
300 |
cgtacatttccttacttggctgaaaaagtatccaaaaactaagatattttactaacaaaacgatcaatataattatttgacgcgagagaagtgctagcaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36812956 |
cgtacatttccttacttggctgaaaaagtatccaaaaactaagatattttactaacaaaacgatcaatataatt-tttgacgcgagagaagtgctagcaa |
36812858 |
T |
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| Q |
400 |
gaccaaaagcgtattttattgccaatcctcttcaacattcacagaaggatgagaggacaccctatgcta |
468 |
Q |
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| T |
36812857 |
gaccaaaagcgtattttattgccaatcctcttcaacattcacagaaggatgagaggacaccctatgcta |
36812789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 353
Target Start/End: Original strand, 9176797 - 9176841
Alignment:
| Q |
309 |
ccttacttggctgaaaaagtatccaaaaactaagatattttacta |
353 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||| |||| |
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| T |
9176797 |
ccttacttggctgaaaaagtatccaaaaactatgatctttcacta |
9176841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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