View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0699_low_7 (Length: 316)
Name: NF0699_low_7
Description: NF0699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0699_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 39999776 - 40000053
Alignment:
| Q |
29 |
attaaattcatcactatggaaagtattatgcaaagaaacactagtcctaccacgttatgagtttattggaaattatgctgtgtatacccccaggccggcc |
128 |
Q |
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| T |
39999776 |
attaaattcatcactatggaaagtattatgcaaagaaacactagtcctaccacgttatgagtttataggaaattatgctgtgtata--cccaggccggcc |
39999873 |
T |
|
| Q |
129 |
tactattgcagctaacataatnnnnnnnnggtatatagcttaaaaactcacatgatgcttggctagctctaacatgtattgttttcttattagcattaat |
228 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39999874 |
tactattgcagctaacataataaaaaaaaggtatatagcttaaaaactcacatgatgcttggctagctctaacatgtattgttttcttattagcattaat |
39999973 |
T |
|
| Q |
229 |
tcaaaatatttacacnnnnnnnatgaag-nnnnnnnncattttccattaacctaacatgttaagaaaatcaaagaataat |
307 |
Q |
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||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39999974 |
tcaaaatatttacactttttttatgaagaaaaaaaaacatttaccattaacctaacatgttaagaaaatcaaagaataat |
40000053 |
T |
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