View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0700_high_3 (Length: 391)
Name: NF0700_high_3
Description: NF0700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0700_high_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 125356 - 125731
Alignment:
| Q |
16 |
agccaaagaagcagggcattccataattatttatcccaacccataaccccagcggcatgtcaaatgcagtgagacgatgtgttgtatcaaacaccacagc |
115 |
Q |
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| T |
125356 |
agccaaagaagcagggcattccataattatttatcccaacccataaccccagcggcatgtcaaatgcagtgagacgatgtgttgtatcaaacaccacagc |
125455 |
T |
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| Q |
116 |
atcaccgaagatatcatacaattggatggatgaggcataggaccaggcaatattttctaaacggttgtttgcatcaagtgtgtactcaaatttaaaatta |
215 |
Q |
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| T |
125456 |
atcaccgaagatatcatacaattggatggatgaggcataggaccaggcaatattttctaaacggttgtttgcatcaagtgtgtactcaaatttaaaatta |
125555 |
T |
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| Q |
216 |
ggatctttgtccttaatatttctgcacattcttaacaaatctagggtttcttcttctggatctaattttctaaatgactggagtaaattccttacgtcct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
125556 |
ggatctttgtccttaatatttctgcacattcttaacaaatctagggtttcttcttctggatctaattttctaaatgactggagtaaattccttacgtcct |
125655 |
T |
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| Q |
316 |
tttcagtaaaaggcaaatatccaggttcgacgcacttctcaagctccataagtctcatcatttgatgaacagaaat |
391 |
Q |
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| T |
125656 |
tttcagtaaaaggcaaatatccaggttcgacgcacttctcaagctccataagtctcatcatttgatgaacagaaat |
125731 |
T |
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