View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0700_low_1 (Length: 696)
Name: NF0700_low_1
Description: NF0700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0700_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 29 - 686
Target Start/End: Complemental strand, 45248121 - 45247465
Alignment:
| Q |
29 |
agatgtaacatatttcacatctgttttctatttgcagttttttaccaccgagccctatgcttgtgaaccgtcaagtttgccaaagtatcctcctagcaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45248121 |
agatgtaacatatttcacatctgttttctatttgcagttttttaccaccgagccctatgcttgtgaaccgtcaagtttgccaaagtatcctcctagcaaa |
45248022 |
T |
|
| Q |
129 |
gaattggatgttaaaatgagagatgaagaagctagaaggtcgtcttattcttttttcgtatttaacttcttgactcactcatcactatgtctatttgctg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45248021 |
gaattggatgttaaaatgagagatgaagaagctagaaggtcgtcttattcttttttcgtatttaacttcttgactcactcatcactatgtctatttgctg |
45247922 |
T |
|
| Q |
229 |
agatgctttttcattttattctcaggcaaaaggcactaaatggaaaagctaatgcagtcgatggtgccaaaagagtcagagcacgtgagcgtggtcgagc |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45247921 |
agatgctttttcattttattctcaggcaaaaggcactaaatggaaaagctaatgcagtcgatggtgccaaaagagtcagagcacgtgagcgtggtcgagc |
45247822 |
T |
|
| Q |
329 |
cattccggccccagaagccaatgcagagatccaaacaaatttagatgtaagtcaaacatatagttatatttgtctgttatacacatacttgacacttaat |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45247821 |
cattccggccccagaagccaatgcagagatccaaacaaatttagatgtaagtcaaaaatatagttatatttgtctgttatacac-tacttgacacttaat |
45247723 |
T |
|
| Q |
429 |
ttttatttaatgtgccgcatatgtacacaatttggctgcagttcattttaattttaaatttctgatccttcaaccaaagttctagcatgtcacatacttt |
528 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45247722 |
ttttatttaatgtgccgcatatgtacacaatttggctgcagttcattttaattttaaatttctgatccttcaaccaatgttctagcatgtcacatacttt |
45247623 |
T |
|
| Q |
529 |
tgtgaataatgaatgtctttgaccttatatgcatctaccgacatacactcatgactaatttaaaatctcactatttggtatttaatatttataaatcata |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45247622 |
tgtgaataatgaatgtctttgaccttatatgcatctaccgacatacactcatgactaatttaaaatctcactatttggtatttaatatttataaatcata |
45247523 |
T |
|
| Q |
629 |
atgtcacctggaacttgagtcctagattcttcagcatttgtttacttgggattctctg |
686 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45247522 |
atgtcacctggaacttgagacctagattcttcagcatttgtttacttgggattctctg |
45247465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 29 - 179
Target Start/End: Complemental strand, 40356380 - 40356226
Alignment:
| Q |
29 |
agatgtaacatattt----cacatctgttttctatttgcagttttttaccaccgagccctatgcttgtgaaccgtcaagtttgccaaagtatcctcctag |
124 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| ||||||| |||||||| || ||||||||||||||||| |||||||| |||||||||||||| || |
|
|
| T |
40356380 |
agatgtaacatatttacatcacagctgttttctatgtgcagttctttaccactgaaccctatgcttgtgaaccatcaagtttaccaaagtatcctcccag |
40356281 |
T |
|
| Q |
125 |
caaagaattggatgttaaaatgagagatgaagaagctagaaggtcgtcttattct |
179 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
40356280 |
taaagaattggatgtgaagctgagagacgaagaagcaagaaggttctcttattct |
40356226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 246 - 377
Target Start/End: Complemental strand, 40356161 - 40356030
Alignment:
| Q |
246 |
attctcaggcaaaaggcactaaatggaaaagctaatgcagtcgatggtgccaaa-agagtcagagcacgtgagcgtggtcgagccattccggccccagaa |
344 |
Q |
| |
|
||||||||||||| || |||| ||||||| |||||||||| |||||||||| | | ||| |||||||||||||| || |||||||| ||||||||| |
|
|
| T |
40356161 |
attctcaggcaaagagctctaagtggaaaatctaatgcagttgatggtgccagacaaagt-agagcacgtgagcgcagttatgccattccagccccagaa |
40356063 |
T |
|
| Q |
345 |
gccaatgcagagatccaaacaaatttagatgta |
377 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
40356062 |
gccaatgcagagatccaaacaaacttagatgta |
40356030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 33269277 - 33269197
Alignment:
| Q |
88 |
cttgtgaaccgtcaagtttgccaaagtatcctcctagcaaagaattggatgttaaaatgagagatgaagaagctagaaggt |
168 |
Q |
| |
|
||||||| || ||||| ||||| ||||||||||| ||||||||||| |||| |||| | | ||||||||||||||||||| |
|
|
| T |
33269277 |
cttgtgatccttcaagcttgccgaagtatcctccaagcaaagaatttgatgctaaagtacgggatgaagaagctagaaggt |
33269197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 30158462 - 30158542
Alignment:
| Q |
88 |
cttgtgaaccgtcaagtttgccaaagtatcctcctagcaaagaattggatgttaaaatgagagatgaagaagctagaaggt |
168 |
Q |
| |
|
||||||| || |||||||| ||||| |||||||||||||| || | |||| ||||||| | ||||||| | ||||||||| |
|
|
| T |
30158462 |
cttgtgatccatcaagtttaccaaaatatcctcctagcaaggagattgatgctaaaatgcgggatgaagcaactagaaggt |
30158542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 853 times since January 2019
Visitors: 4356